Shixiang Wang (王诗翔)

I have seen @PoisonAlien your `verbose` option setting in many functions, I think this can be also closed

@DarioS You are right at some point. However, @PoisonAlien has provided a solution `verbose` to bypass it. I think an option here is better than function `suppressMessages()` in many cases....

@biosunsci Thanks for reporting and tagging me. I can reproduce this error with builtin laml data The following code can fix this issue, @PoisonAlien Could you replace and check it...

@TescoOriginal Please pay attention that the absolute exposure is not the `H` matrix, it should be scaled. Here is what I did in `sigminer`: https://github.com/ShixiangWang/sigminer/blob/565fe651eee486e015db13b816de93bf54f784e0/R/helper_scale_nmf_matrix.R#L22-L25

@PoisonAlien I don't see what I want from running the following code ``` library(maftools) # I used the latest version from GitHub laml.maf = system.file('extdata', 'tcga_laml.maf.gz', package = 'maftools') laml.clin...

Still wait a fix.

Hahah, @PoisonAlien you maybe have forgotten this 😭

It seems this issue suspends for almost a year. I will try to implement it and submit a PR recently.

do you read maf file as MAF object with no errors?

@scha36 The strange thing is I have no error when running `plotmafSummary()` function. My computer just installed R and RStudio yesterday. ``` library(maftools) maf = read.maf(maf = "~/Downloads/example/example_mut", clinicalData =...