Shaowen Jiang

showticklabels False cannot remove the empty space of the bottom

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# Describe the bug Hi, Is that a way to remove the huge empty space of the bottom area? My dataframe has long column names and I have removed it...

TCGA CNV data without sample type options?

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with the Gene Level Copy Number Scores Here is my code all_projects

Dear TCGAbiolinks developers, Could you tell me if the GDCquery_Maf function would only return the SNP results? How can I get also the INDEL mutation results from TCGAbiolinks? Thanks

Questions about the results of pySCENIC

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Hi pySCENIC developers, I tried with pySCENIC roughly, and the results were pretty good and interesting, which confirmed by our Seurat foundings. But I am not very sure how to...

SCTransform Normalize Sequencing Depth

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Hi, I just have a quick question, How does SCTransform Normalize Sequencing Depth across all cells, do you need to specify the argument vars.to.regress = "nCount_RNA" in the SCTransform function?...

Dear scarHRD developers, Can I use another reference genome is this fantastic pipeline? like mm10? Thanks,

Monocle2 num_path arguments in orderCells

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Hi dear Monocle group, I am trying to building a trajectory from my samples. By using the default method, the results look a little weird which there would be a...

Dear DEGreport developers, Thanks for developing this very helpful tool. I have a question regarding the DEGpattern function. In the figure below, it seems like you can sub-divided the group...

Error in calculate_rrs

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Hi scFunctions Developer, Nice package for doing this. But in the tutorial, I think you missed the code for calculating the RSS. Nevertheless, I got an error while I tried...

Ambiguous Gene Usage in TRBD

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## ❓ Questions and Help Hi, I was curious whether the ambiguity of nomenclature ("TRBD1, TRBD2" and "TRBD2, TRBD1") in the below figure are caused from the MIXCR input? or...