ORNA

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Hello devs, If I run "$ORNA -pair1 1.fa.gz -pair2 2.fa.gz -output test/test" in a folder where test/ does not exist, the program would silently fail, with no output files in...

raymond-u

Hello! Thank you for a great tool! I noticed the error message to inform wrong. In case I have forgotten to define the -cs option value, the error message tells...

asan-emirsaleh

Orna is great. It does take a while to run though on bigger projects (no criticism here). Then you run on a server, the specified time does not always allow...

gonzalezem

EXCEPTION: error opening file: tmp/s2228.fq ()

8

I tried to run ORNA on a large dataset (each fastq file ~45 GB, paired end), but it fails with the above error. The DSK step seems to work fine,...

Shellfishgene

Running error: Too many open files

1

Hello SchulzLab, I wanna use ORNA to normalize my datasets and I tried it on an fastq file but failed. This fastq file is the RNAseq sample with 150bp read...

summerXiaHan

EXCEPTION: This dataset has no solid kmers

1

Hello SchulzLab, I tried to run ORNA, but came out with the following errors: ``` (tsm-py3) tanshiming@S620100019205:~/Documents/CaoBin/October-2018/trimmed_duk_kmer31$ ORNA -pair1 /home/tanshiming/Documents/CaoBin/October-2018/trimmed_duk_kmer31/MFC280618_S2_R1_001.fastq.gz -pair2 MFC280618_S2_R2_001.fastq.gz -kmer 31 -nb-cores 15 -verbose 1 -ksorting 1...

shimingt