Saveli01

Question Ragtag scaffold command parameters

4

When I use this command: ragtag.py scaffold -u -w -r -g 1 drosophila_reference.fasta DROS_scaf.fasta The gap lengths work perfectly for length = 2 or higher. But when the gap has...

How to output merged fasta?

1

Hello, Thank you for making such an incredibly useful set of tools! I have successfully used bedtools merge to make a bedfile. However, I have not been able to find...

how to resolve overlaps?

1

Hello, Thanks again for making this useful program. I have successfully used the functions of Racon, but I have not been able to find a way to resolve overlaps. When...

error: overlap is not transmuted!

7

Hello, Thank you for writing this very useful program. I hope you can help me with this problem. I see other issues about this error but I haven't gotten it...