How to output merged fasta?

Open Saveli01 opened this issue 3 years ago • 1 comments

Hello, Thank you for making such an incredibly useful set of tools!

I have successfully used bedtools merge to make a bedfile. However, I have not been able to find how to extract a fasta file from the merged.bed output. The getfasta function throws an error that there is a length mismatch (of course there is.)

Can you offer any advice as to which combination of tools I can use for this?

Thanks!

Apr 24 '22 13:04 Saveli01

Can you give a minimal example of a BED record and FASTA that cause this issue?

May 09 '22 12:05 arq5x