Sameer Hassan

To bold the base

4

Hi, How to bold or increase the text size for the sequence position number  Thanks!

Hi, I am trying to use BioGrapy and i get this error: ModuleNotFoundError: No module named 'drawer' Do you have an update version of this package? Thanks!

How to download PMID for a Bioproject

3

Hi, I have a list of bioproject ids and would like to extract the PMID for each of the bioproject id. Any suggestion? Thanks in advance!

Hi, I have used bowtie2 --local for mapping my sequence data against a reference genome. I have filtered the multi-mapped reads from the .bam file and would like to find...

Memory issue while using coverage

1

Hi, I am using coverage to calculate the breadth of coverage of genes from a merged bam file. However, I encounter a memory issue. I would like to know if...

Is it possible to extract the dataframe from heatmap after zscaling?

1

Hi, Thanks for the nice package. I would like to know if it is possible to download the data frame after executing the visuz.gene_exp.hmap function with Z-score standardization. Thanks in...

Hi, I have SNPs called for 20 samples in a single multi-sample VCF file. I like to extract the unique SNPs in Sample1 compared to all the other samples in...

Error while running runQTLseqAnalysis

1

Hi, I using QTLSeqr for BSA analysis for the wheat genome. I have the vcf file generated using Freebayes. also have the column names as required by the program. While...

AttributeError: module 'numpy' has no attribute 'int'.

4

Hi, While fitting the model, i get the following error: dec_reg = np.zeros(n_feat, dtype=np.int) AttributeError: module 'numpy' has no attribute 'int'. Thanks!