Error while running runQTLseqAnalysis

Open Sameerpython opened this issue 1 year ago • 1 comments

Hi,

I using QTLSeqr for BSA analysis for the wheat genome. I have the vcf file generated using Freebayes. also have the column names as required by the program. While executing the runQTLseqAnalysis, I get the following error: `Error in dplyr::mutate(., tricubeDeltaSNP = tricubeStat(POS = POS, Stat = deltaSNP, :

ℹ In group 1: CHROM = 1A. Caused by error in lfproc():`

Can I know how to solve this error? Thank you!

Jun 05 '24 10:06 Sameerpython

I don't think you are posting the whole error here. But if I am guessing correctly it is related to the vertex space

See here: https://github.com/bmansfeld/QTLseqr/issues/60#issuecomment-1550371353

and elsewhere this issue is described. Please read the vignette too. Ben

Jun 11 '24 03:06 bmansfeld