Simon Pearce
Simon Pearce
I think I've figured this out, just need to finish it off
I've updated this subworkflow, tests should hopefully now pass. However, it shouldn't be merged until a decision is made about what to do with the alt_liftover file, currently the bwa/mem...
Replaced by #8962
Hi @mari-ga . I'm back to having a little bit of spare time to look at nf-core things again, I'll try and take a proper look today.
> @mari-ga @SPPearce Is this PR still relevant? :) Uhhh, that one would be on me, looks like I was supposed to be reviewing it and forgot 😞 Apologies @mari-ga...
> @SPPearce Maybe we can remove conda support for now and add it back in if strelka starts supporting python3? Hmmm, strelka is used in sarek, I don't think that...
I'm going to ping @LouisLeNezet here and hope that he is willing to do some work on the docs ;)
Why is the read group parsing being removed?
@matthdsm , can you take another look at this now?
@matthdsm , @glichtenstein, are you happy with this?