pyprophet
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PyProphet
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
Windows Server Both `pip install pyprophet` and `pip install git+https://github.com/PyProphet/pyprophet.git@master` fails on numpy even though numpy is installed: ```` PS C:\Windows\system32> pip install git+https://github.com/PyProphet/pyprophet.git@master Collecting git+https://github.com/PyProphet/pyprophet.git@master Cloning https://github.com/PyProphet/pyprophet.git (to revision...
Added `keep_naked_peptides` flag to the filter module to allow the user to add a list of strings of peptides to specifically filter for these peptides only. Added for sqMass and...
Added CLI module to split a merged osw back into their individual runs. Useful if you want to work with smaller individual files.
### Issue Some data scientists are not as familiar/comfortable with examining files in SQLite based formats however require more information than what is output from the export tsv (e.g. OpenSwathScores)...
Problem: Currently XGBoost model does not store feature names, just stored as f1...fn. Solution:Before exporting the model add the feature names.
Hi, is it possible for Metabolomics to process OpenSwath data with Pyprophet in global context to filter a pan library to a subset library? Greetings
I have meet an error when I run my code as follows:  Besides, I meet continuous problems when I install pyprophet. For now, the environment has python of 3.9.13,...
Hello, I encountered an error when going from OpenSwathWorkflow into pyprophet. As some background, I have one .mzML file that I aligned with a library with the .TraML extension, not...
Dear developers, Thank you very much for providing such very nice software for FDR computation and scoring. We noticed that the current color scheme of the automatically generated FDR scoring...
Is ti pyprophet able to export datasets compatible with R package Swath2Stat? I exported a tsv using the following command: `pyprophet export --in=data/merged.osw --out=data/legacy.tsv` The file does not look like...
