pyprophet

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New Workflow: LDA then XGBoost

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New workflow which first runs LDA and then runs XGBoost using the LDA results as the main score. This helps prevent pi0 errors that run into with XGBoost. Overall, the...

jcharkow

Investigate Memory Usage of Scoring

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## Proteomics Dataset 16 runs, ~32K precursors (target + decoy), ~196K transitions, ~1.4M precursor features (peak-groups) ##### Command ``` /usr/bin/time pyprophet score --in merged_osw.parquet --level ms1ms2 --classifier SVM --xeval_num_iter 3...

singjc