Prakrithi-P

Coverage matrix for regions

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Hi , Thank you so much for the package. I'm wondering how to load .bw files and calculate coverage matrix for specified custom regions. I couldn't find this in the...

Hi ! Thank you for the amazing tool. I am curious if scTenifolfKnk was tested for KO of lncRNAs and how well it would work. Insights into this or suggestions...

MetaspotsByGroups : Error in `as.Graph()`

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Hi Sam, i get an error while runnning MetaspotsByGroups. It used to work fine but I have recently been getting this error Error in `as.Graph()`: ! Please provide rownames to...

multiSampleComparisonClonalCN Error in vegaMC_R(mtx = mtx, output_file_name = paste("./output/", sample, : NA/NaN/Inf in foreign function call (arg 1)

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Hi, Thanks for the wonderful tool. However, I have been facing some issues. When I run the single sample pipeline, it works fine (some samples throw an error which I...

Hi, Thanks for the great tool. It works great for single sample pipeline with a tumor sample, correctly identifying tumor cells. However, as a control, when I test for sample...

Hi, Thanks for the great tool. I have been using scNanoGPS but looks like all reads that are expected to map to + strand are assigned with minus and the...