tomviz

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Volume rendering fails if an array dimension is larger than 2048

2

**Describe the bug** I get an error message when visualizing a dataset with size of 2500x2500x100. After some trials, it seems that the error occurs if an array dimension is...

yijiang1

(Animation tool) Various issues including not displaying animation or adjusting frame rate

5

We have a variety of bugs in the animation tool. Some of which may be new to 1.0.1 Cannot set the framerate when saving a video and the advanced settings...

Hovden

Volume rendering less opaque from live pipeline on macOS

2

Tracking an issue @jtschwar pointed out, it only seems to occur on macOS. Verified on badapple, Windows and Linux behave as expected. The live updated volume render  versus one...

cryos

NeXus HDF5 format support

5

[NeXus](https://www.nexusformat.org/) is a file format based on HDF5 for neutron, x-ray, muon science, and a definition for scanning transmission electron microscopy (STEM) is in the works: https://github.com/LiberTEM/LiberTEM/issues/15 A python library...

magnunor

Add More Colormap Functionality (Set Extrema)

8

There should be a user friendly way in which the user can select the minimum and maximum of the colormap being applied. Right now the user can set these values...

Hovden

Include GENFIRE as a reconstruction method

21

This is a feature request to include [GENFIRE](http://www.genfire-em.com) as an option for reconstruction within Tomviz. I intend to write the plugin and make a PR, and I am mainly opening...

apryor6

Document segmentation operators

2

The segmentation operators have evolved to a point where we have a range of available segmentation approaches available, but it isn't obvious to the uninitiated how they should be used....

cryos

Reset center of rotation after transforms

3

The default rotation center is at the center of the matrix: If I do some transform that changes data size, say downsample by 2, then the rotation center often ends...

yijiang1

Dimensions & Range in Properties Panel sometimes extends outside the panel region

2

  The "Dimensions & Range" table in the "Properties" panel sometimes extends outside the panel region if the left panel isn't large enough to fit it. You can see...

psavery

Docker Pipelines: Crop breaks a pipeline

1

I know that "Crop" in "Data Transforms" is not a python script, and that means you can't run it in the docker pipeline mode. However, running it in docker pipeline...

psavery