tomviz
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OpenChemistry
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
We can currently perform operations on all scalars like the following example, which inverts each of the scalars: ```python def transform(dataset): import numpy as np for name in dataset.scalars_names: scalars...
**Is your feature request related to a problem? Please describe.** The issue is that when you have a vertical tilt axis the manual tilt axis alignment wizard allows you to...
Hi, if I have a txt file (x,y,z,value), x, y and z are coordinate positions, and value is my tomography result (such P wave velocity). How do I convert this...
I want to create an EMD file which will be recognized by tomviz as a tilt series and load the angles in the dim1 dataset. I see that in [this...
**Describe the bug** MRC files with uint16 dtype are incorrectly imported. The file is read in quarters. and the rest of the tilt series is empty. Maybe an issue with...
**Is your feature request related to a problem? Please describe.** A clear and concise description of what the problem is. E.g. I'm always frustrated when [...] Trying to use the...
**Describe the bug** Attempting to use `tomviz-pipeline` to batch process reconstruction and threshold EMD files. Ultimately I want to export the final threshold-ed volumes for further analysis in a separate...
The primary operators in tomviz that produce children via `dataset.create_child_dataset()` are reconstruction operators. Since usually only one reconstruction is performed on a data source, running multiple child-producing operators on one...
If you load up the tilt series example, and change the color map preset to "Linear Green", it appears like this:  If you then save it to a state...
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Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data