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[Docs]: Extra unsupplied attrs in `VoltageClampStimulusSeries`, merge inheritance behavior needs more documentation

8

### What happened? Validating `nwb_linkml` & `nwb_models` against live and synthetic data, and it looks like `VoltageClampStimulusSeries` adds additional attributes into the `data` dataset, and the validator doesn't catch it....

sneakers-the-rat

[Bug]: PatchClampSeries gain is optional in the schema but required in pynwb

1

### What happened? I believe the schema indicates that `PatchClampSeries.gain` is an optional dataset with a quantity of 0 or 1: https://github.com/NeurodataWithoutBorders/nwb-schema/blob/35889d36dfa088ec4a3614fa0350c02ced4a068c/core/nwb.icephys.yaml#L28-L31 while `pynwb` requires that gain is provided as...

stephprince

Create default processing modules

2

## Motivation Fix #946. @bendichter let me know what you think. With this PR, a new `NWBFile` will contain empty `ProcessingModule` objects named "ecephys", "icephys", "ophys", and "behavior" on initialization....

rly

Add warnings when using positional arguments in container constructors

1

## Motivation Fix #1968. Add warnings to `Container` constructor methods when using positional arguments. TODO - [x] change PR target to merge into 3.0.0 branch for upcoming major release ##...

stephprince

### What would you like to see added to PyNWB? To better support changes in NWB Container constructor arguments (e.g., https://github.com/NeurodataWithoutBorders/pynwb/issues/954), we would like to start the process toward not...

rly

Deprecate ImageMaskSeries

1

## Motivation Corresponds to https://github.com/NeurodataWithoutBorders/nwb-schema/pull/583 - Waiting on test suite to pass - Waiting on schema changes to merge to dev ## How to test the behavior? ``` ImageMaskSeries() #...

rly

Deprecate EventWaveform class

1

## Motivation Corresponds to https://github.com/NeurodataWithoutBorders/nwb-schema/pull/584 - Waiting on test suite to pass - Waiting on schema changes to merge to dev ## How to test the behavior? ``` EventWaveform() #...

rly

[Bug]: `PoseEstimationSeries` creation is significantly increasing sleap-io test runtimes

3

### What happened? Since the pynwb update from version 2.7.0 to 2.8.0, sleap-io tests have been experiencing significantly longer runtimes, which prevent our GitHub workflows from completing. For example, on...

keyaloding

[Documentation]: Invalid(?) dtype in general/extensions.py tutorial

2

### What would you like changed or added to the documentation and why? in the `general/extensions.py` tutorial, one of the `dtype` values is set to `uint` https://github.com/NeurodataWithoutBorders/pynwb/blob/2d00afe30b3116c714e53a39522488e97c9160c5/docs/gallery/general/extensions.py#L404C13-L404C18 However, I don't...

ehennestad

[Bug]: UserWarning: NWBFile not found within the configuration for core

1

### What happened? When linkml is installed, the test suite generates a few unexpected warnings. See https://github.com/NeurodataWithoutBorders/pynwb/actions/runs/10053028713/job/27828470283 I am not sure why they are being generated or if this might...

rly