pynwb

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Are image or pixel masks required for segmentation?

2

So, we have diverging behavior if we create the plane segmentation. This, no image mask, works: ```python from pynwb.testing.mock.file import mock_NWBFile from pynwb.testing.mock.ophys import mock_ImagingPlane, mock_OpticalChannel from pynwb.testing.mock.device import mock_Device...

h-mayorquin

## Motivation - Fix #2100 ## How to test the behavior? See tests ## Checklist - [ ] Did you update CHANGELOG.md with your changes? - [x] Have you checked...

rly

Add 'target_tables' kwarg to DynamicTable subclasses

1

## Motivation Fix #2096 ## How to test the behavior? Create extension that defines a DynamicTableRegion column. Use get_class to get the class, and use the `target_tables` keyword argument. See...

rly

### What would you like to see added to PyNWB? DynamicTable has an additional constructor argument "target_tables", a dict that specifies the mapping of DynamicTableRegion columns to the table. This...

rly

> I think the original LucidChart ones were a little easier to read in terms of appearance and how the VectorData type was written, but this also works! > I...

rly

[Documentation]: Remove label key in add_electrode function

1

### What would you like changed or added to the documentation and why? The tutorial "Extracelllular Electrophysiological Data" contains a section that references the `add_electrodes` function [here](https://pynwb.readthedocs.io/en/stable/tutorials/domain/ecephys.html). ``` nwbfile.add_electrode( group=electrode_group,...

timonmerk

pynwb-validate does not detect missing timezone in datetime objects

1

Related to this [issue in dandi-cli](https://github.com/dandi/dandi-cli/issues/1640) and [this one in nwbinspector](https://github.com/NeurodataWithoutBorders/nwbinspector/issues/594), both within the ecosystem: A user created a file in MATLAB using datetime objects, but without specifying a timezone....

h-mayorquin

[Feature]: Recommend compression and chunking options based on data type and shape

2

### What would you like to see added to PyNWB? Follow-up to @satra's comment: https://github.com/dandi/helpdesk/discussions/184#discussioncomment-13093548 > more generally it may be nice if we created a little function in nwb...

rly

Enhance get_type_map to support deepcopy option and improve extensions handling

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Cline-assisted fix #1958 I have addressed the performance issue in `PoseEstimationSeries` creation by making two key changes: 1. __Modified `pynwb.get_type_map()` (in `src/pynwb/__init__.py`):__ - Added a `copy` parameter (boolean, defaults to...

bendichter

[Bug]: EventDetection `source_idx` shape doesn't validate

1

### What happened? Hello! I'm attempting to convert my data to the NWB format, and have some voltage traces recorded from a multi-electrode array. Spikes were detected in these traces....

naterenegar