FragPipe

FragPipe copied to clipboard

How to set a modification not C-term?

3

Hello, When using the Fragpipe, I have a problem with the modification setting. How to set a modification not C-term, like this in Spectronaut?  Thank you!

a995752924

MSFraggerGlyco to Skyline document

4

**- Upload your log file** (If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation,...

juank1892

**- Describe the feature:** Basically, I would love to get support for crosslinking MS, wherein we can specify the crosslinker mass, and calculations are made to find whether two peptides...

bluemooninvestor

PTM-Shephard outputs

1

Hi, Is there an updated table column guide for ptm shephard outputs. I found the guides for global.profile.tsv and global.diagmine.tsv, but I am looking for more information about the diagnosticProfile.txt...

lbeer272

Questions about searching the Pierce iRT peptides.

18

**- Upload your log file** (If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation,...

vindr20

Got trouble when using two_pass_search of Fragpipe

3

Hi, It's very thankful to develop two_pass_search methods, and it's very helpful to discover some novel peptides. I tried this workflow first time, it worked well. But when I tried...

watermelon-virus