Matt Olm

Try making a new environment, e.g. with the command: `conda create -n drep drep`

Hello- Unfortunately this seems to be an error with `scikit-learn`, which I don't know how to troubleshoot. You could try installing with pip instead? E.g.: `pip install drep` -Matt

Hi @susheelbhanu Interesting. A couple of thoughts- 1) Can you confirm that you're on the most up-to-date version of dRep? I remember this bug from a previous version but I...

Hi Susheel, No need to install any of the other dependencies- those aren't needed for what you're running. The two recommendations I have are to update to the latest version...

Hello, At the moment the only way to fix the issue is to rename the genome names to be unique, either with a symlink or copying them (as you say)....

Hi Rasmus and Camilla, Thanks for the feedback. I haven't used many long-read bins in my own research so I wasn't aware of this issue, and thanks for bringing it...

Hi @jdwinkler-lanzatech - dRep's timing estimate is just an estimate and unfortunately it can be very off. In general the less clusters there are the faster dRep goes (comparing lots...

Hi Jianshu, 1) That sketch size is only used for Mash, not fastANI. In dRep, the goal of Mash is to provide a quick pre-clustering, so the accuracy doesn't matter...

Hi Jianshu, Ah I see- I understand now. In that circumstance it would certainly make sense to increase the `-ms` parameter to a higher value, but I don't really want...

I see- this does make sense and does sound reasonable. I'll look into adding a warning like this during the next dRep update