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Support for long genome name

Open Hocnonsense opened this issue 3 years ago • 2 comments

  • Feature request

Recent years, DASTool is being popular. However, DASTool always put bins to <custom_name>_DASTool_bins/, so when I compare Bins from different folder, an duplicate genome basenames exception will be raised.

Is dRep possible to handle this problem? Or can I give a custom name to the genome in a tsv file? I think ln or cp the raw bins can expansion more easily. e.g. different version or waste storage

Thanks!

Hocnonsense avatar Aug 29 '21 07:08 Hocnonsense

Hello,

At the moment the only way to fix the issue is to rename the genome names to be unique, either with a symlink or copying them (as you say). If I were you I would just rename them to include the name of the folder they are in using a tool like awk (if you are familiar with it).

Thank you for the feature request; I will look into doing this the next time I update dRep.

Best, Matt

MrOlm avatar Aug 29 '21 10:08 MrOlm

Thanks! Hoping dRep to be better :)

Hocnonsense avatar Aug 29 '21 12:08 Hocnonsense