princess
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MeHelmy
Hello. I created a virtual environment for princess and did the setup as described in the README file. Here is my command for princess: `./princess all -d /path/to/output/ -r ccs...
Hello, I'm trying to run princess on a single node using a total of 24 cores. When I run the task using the command: ``` princess all -f reference.fa -j...
Is there a way to specify the -r option per read? My samples are a mix of pacbio and nanopore reads. I was guessing the SV and SNP genotyping would...
**Issue for running locally:** Command: `./princess all -d /path/to/output/directory -r ont -e False -a minimap -s /path/to/fastq.gz -f /path/to/reference.fna -c chr15 -m -md /path/to/fast5/folder/` Error: `Invalid config definition: Config entries...
Hi, The preprint mentions that parental information can be used by the tool but it is not clear where this can be given in the help documentation and how you...
An error
Hi there I ran a trial test using the command line as: princess all --directory analysis --ReadType ccs --ref /home/bwu3/Used_V41_P13_107/p107.ens.fasta --jobs 7 --sampleFiles HiFi.fastq.gz --latency-wait 200 -p -c 2 --verbose...
Hi! After princess was installed, "princess -h" doesnt work. It says "command not found". Anyone can help? Thanks! :)
Hi! Hope you can help me. I can't run this readme line: princess all -d ./princess_all -r ont -s reads.split00.fastq.gz reads.split01.fastq.gz -f hs37d5_mainchr.fa I also tried to run samtools unsuccessfully...
Hello I'm trying to run Princess on a cluster managed by Slurm. I've followed the 4 steps indicated to change the configuration files and the minimap job has been submitted...
