Mahan

Thanks for the clarification Florian. Assuming that I have obtain PRS in reg.dat file, how can I obtain PRS for the 3 models? (inf, grid and auto) TIA

I'm following the LDPred2 tutorial from here: https://choishingwan.github.io/PRS-Tutorial/ldpred/ The PRS is stored in daf called reg.dat in the following step: reg.formula % paste0("Height~PRS+Sex+", .) %>% as.formula reg.dat

Thanks, Daniel, let me give it a try.

I wanted to use this function because I only have BETA & SE in sum stats. Any workaround?

Thanks patrick

Thanks for your suggestion. I sorted this out by including following command in my code: --ld_ref_panel /opt/MTAG/mtag/mtag/ld_ref_panel/eur_w_ld_chr/ \ However, now I have a new error, which I didn't face before....

Hi Patrick - I have sent you an email. Please let me know if you need more details. Thanks in advance.

Hi Patrick, I have emailed you the complete log.

Hi Patrick, thanks for your explanation. What will be a formula to calculate N_eff if my phenotype is binary?

It should be logistic regression