Mahmoud Ahmed
Mahmoud Ahmed
I noticed that sometimes the numeric values of the images loaded by `load.imgae()` are different when using ubuntu and windows. I traced this issue back to `jpeg::readJPEG`, at least in...
Hi @kassambara I previously suggested `qc_read_collection` and `qc_plot_collection` to handle multiple files of the `fastqc` output. The read function is however limited to using the raw `fastqc` files. I want...
I think this reference is meant to be `fig:syntax` to compile properly in the pdf. https://github.com/jtextor/dagitty/blob/b31c919504b20d9dba4a09a9c321cb6583214807/doc/manual-3.x.tex#L916
* Add an argument `n_max` to give the maximum allowed number * Count the number of Ns in each generated sequence * Write-off the sequence if it contains Ns >...
## Summary As it stands, `colocr` is functional but switching the main dependency from `imager` to `magick` has been proposed https://github.com/ropensci/onboarding/issues/243#issuecomment-425357850. The two main changes would include: * Changing the...
Would be great to have a feature to allow for adjusting for artifacts in the images such as luminescence, which might affect the final calculations.
Related #4 Here, I tried to quickly reproduce the normalization factor and the relative fold change using an example of the geNorm method. The following code shows the data in...
I am using intermineR to query the TargetMine. Following the instructions in the intermineR.pdf and manual page I should be able to get a query template using `getTemplateQuery` or construct...
Hi, `pathme kegg bel` runs fine ```bash 2021-04-10 01:41:29,852 - INFO - pathme.cli - Initiating HGNC Manager 2021-04-10 01:41:29,939 - INFO - pathme.cli - Initiating ChEBI Manager Exporting KEGG to...
Related to https://github.com/nf-core/sarek/issues/687, which is marked complete but `loftee` still do not run and generates the same warning. ### Description of the bug I am trying to annotate a vcf...