Mahmoud Ahmed
Mahmoud Ahmed
Sure. I was just looking for a contribution guide. I joined the channel.
I've written a subworkflow to annotate variants using VEP in multiple chunks ([here](https://github.com/houlstonlab/annotate-vcf-vep)). The idea here is to 1. Extract variants intro a text file, and split the file into...
Yes. I'd like to add it to the pipeline. However, again, I am not sure how to put it in the subworkflow. Do I start by adding the modules then...
- Please check this section of the vignette https://docs.ropensci.org/colocr/articles/using_colocr.html#analyzing-a-collection-of-images-at-once
- I am not sure what to do in that case. You could try to replicate the processing in `colocr` - I assume you can. Can you give an example?
Hi, Your file, as it stands, is missing important information that need to be added. And I suspect would make your life easier going forward. If the PCR reaction was...