Mahmoud Ahmed comments

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                                            Mahmoud Ahmed

geNorm Normalisation

Hi @stefanCoH Yes. I am planning to add the feature to the package. In fact, I already add code for two functions `pcr_nf` and `pcr_genorm` to calculate a normalization factor...

geNorm Normalisation

Thanks a lot @lmanchon. I'd be very grateful.

geNorm Normalisation

Thanks @lmanchon. Actually, I am tried to use this dataset before but the issue was, it only has the relative expression values, not the Ct values. Also it has data...

geNorm Normalisation

Thanks @lmanchon and @stefanCoH. This is very helpful.

geNorm Normalisation

I tried to provide the same implementation in a python package. Here, https://github.com/MahShaaban/pycr

Hi @janstrauss1 I tried to implement GeNorm and algorithms for selection suitable references, and made some progress ([multiref](https://github.com/MahShaaban/pcr/tree/multiref)). It is not ready however for a CRAN release. The main issue...

geNorm Normalisation

Thanks @janstrauss1 I really appreciate you sharing this dataset and congrates for the paper.

`vep_loftee` doesn't add the expected columns to `INFO/CSQ`

These are the lof files I could find. There isn't a `loftee.pm` file. But this issue claim that `LoFtools` should work, meanwhile the issue is `Bio:perl` not found is the...

`vep_loftee` doesn't add the expected columns to `INFO/CSQ`

Hi @mi3112 unfortunately I haven't been able to get the plugin to work. What I've learned since then is that it has to do with the installation of the plugin...

Why is the `ENSEMBLVEP_VEP` process not ran on chunks?

Thanks, @FriederikeHanssen That makes sense. Hopefully the team will get to it soon.