Synb0-DISCO
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MASILab
Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
Hello, I try to use Synbo-DISCO for the first time with Docker. I set my T1raw + first b0 +acqparams.txt (0 -1 0 0.0351891 and create the second line :...
Hello, First of all, thank you for your work and for this amazing tool! I am preparing to release custom DWI peprocessing and a tractography pipelines on github which make...
My apologies for the basic question: In the case of multiple concatenated b0 images, should the acqparams.txt contain _n+1_ rows, _n_ being the number of b0 volumes?
Hi and thank you very much for sharing this program. I was hoping for some advice on an error that keeps being thrown when running the following command: ``` sudo...
Hi , First of all I wanted to say thank you for making this amazing method that can solve lots of distortion correction problems on dataset without reverse gradient. Your...
sudo docker run --rm -v $(pwd)/inputs/:/INPUTS/ \-v $(pwd)/OUTPUTS:/OUTPUTS/ -v /home/baris/freesurfer/license.txt:/extra/freesfsleurfer/license.txt --user $(id -u):$(id -g) hansencb/synb0 when i write this command i take this error. Total elapsed time: 335.6 ------- Apply...
Hi all, I was able to get all the files needed for eddy, but when I attempted to run, I kept getting this error message: > TopupFileIO:: msg=TopupFileReader::MovePar: Index i...
Hello, I can't find your dockerfile, in order to ease our preprocessing, we would like to use synb0-DISCO in our singularity container, can you provide it to us? You can...
Hi there! We've been having issues getting synb0 to work using docker / podman (we're using CentOS 7 on IT managed computers with our users existing on a server we...
Hi I have an error message "Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_*" I want to know if a file. sub_acq-AP_dwibval conteine only 1000 is for an...
