"Image Exception : #63

Open Meryam1985 opened this issue 2 years ago • 2 comments

Hi I have an error message "Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_*" I want to know if a file. sub_acq-AP_dwibval conteine only 1000 is for an only b0 image or not... how to differanciate... BECAUSE I NOTED THAT THERE ARE OTHER IMAGES whose sub_acq-AP_dwi.val has the following values. 0 0 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 knowing that I had the following error. (base) besma@besma-ThinkCentre-M720t:/media/besma/docc/freesurfer-linux-centos6_x86_64-7.1.1/freesurfer/adsub/sub-002S1155/ses-001$ sudo docker run --rm \

-v /media/besma/docc/freesurfer-linux-centos6_x86_64-7.1.1/freesurfer/adsub/sub-002S1155/ses-001/dwi/:/INPUTS/
-v /media/besma/docc/freesurfer-linux-centos6_x86_64-7.1.1/freesurfer/adsub/sub-002S1155/ses-001/dwi/out:/OUTPUTS/
-v /media/besma/docc/freesurfer-linux-centos6_x86_64-7.1.1/freesurfer/license.txt:/extra/freesurfer/license.txt
--user $(id -u):$(id -g)
justinblaber/synb0_25iso [sudo] password for besma:

INPUTS: Distorted b0 path: /INPUTS/b0.nii.gz T1 path: /INPUTS/T1.nii.gz T1 atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz T1 2.5 iso atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz Results path: /OUTPUTS

Job directory path: /tmp/tmp.hh0vCEw4zT

Making results directory...

Normalizing T1 normalize_T1.sh /INPUTS/T1.nii.gz /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz

INPUTS: T1 path: /INPUTS/T1.nii.gz T1 N3 path: /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz T1 normalized path: /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz

Job directory path: /tmp/tmp.MLt16FY2Ij

mri_convert /tmp/tmp.MLt16FY2Ij/T1.nii.gz /tmp/tmp.MLt16FY2Ij/T1.mgz mri_convert.bin /tmp/tmp.MLt16FY2Ij/T1.nii.gz /tmp/tmp.MLt16FY2Ij/T1.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /tmp/tmp.MLt16FY2Ij/T1.nii.gz... TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /tmp/tmp.MLt16FY2Ij/T1.mgz...

mri_nu_correct.mni --i /tmp/tmp.MLt16FY2Ij/T1.mgz --o /tmp/tmp.MLt16FY2Ij/T1_N3.mgz --n 2 / /extra/freesurfer/bin/mri_nu_correct.mni --i /tmp/tmp.MLt16FY2Ij/T1.mgz --o /tmp/tmp.MLt16FY2Ij/T1_N3.mgz --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux 67a8343f93b7 5.11.0-27-generic #29~20.04.1-Ubuntu SMP Wed Aug 11 15:58:17 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Sun Sep 5 13:47:45 UTC 2021 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23 / mri_convert /tmp/tmp.MLt16FY2Ij/T1.mgz /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu0.mnc -odt float mri_convert.bin /tmp/tmp.MLt16FY2Ij/T1.mgz /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /tmp/tmp.MLt16FY2Ij/T1.mgz... TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu0.mnc...

Iteration 1 Sun Sep 5 13:47:46 UTC 2021 nu_correct -clobber /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu0.mnc /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu1.mnc -tmpdir /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/0/ [@67a8343f93b7:/] [2021-09-05 13:47:46] running: /extra/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/0/ /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu0.mnc /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu1.imp

Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Processing:.............................................Done Number of iterations: 46 CV of field change: 0.000975643

Iteration 2 Sun Sep 5 13:48:19 UTC 2021 nu_correct -clobber /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu1.mnc /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc -tmpdir /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/1/ [@67a8343f93b7:/] [2021-09-05 13:48:19] running: /extra/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/1/ /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu1.mnc /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.imp

mri_binarize --i /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc --min -1 --o /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz

$Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd / cmdline mri_binarize.bin --i /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc --min -1 --o /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz sysname Linux hostname 67a8343f93b7 machine x86_64 user UNKNOWN

input /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 10813440 values in range Counting number of voxels in first frame Found 10813440 voxels in final mask Count: 10813440 14434198.710938 10813440 100.000000 mri_binarize done mri_segstats --id 1 --seg /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz --i /tmp/tmp.MLt16FY2Ij/T1.mgz --sum /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/sum.junk --avgwf /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/input.mean.dat

$Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz --i /tmp/tmp.MLt16FY2Ij/T1.mgz --sum /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/sum.junk --avgwf /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/input.mean.dat sysname Linux hostname 67a8343f93b7 machine x86_64 user UNKNOWN UseRobust 0 Loading /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz Loading /tmp/tmp.MLt16FY2Ij/T1.mgz Voxel Volume is 1.33484 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation

Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/input.mean.dat mri_segstats done mri_segstats --id 1 --seg /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz --i /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc --sum /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/sum.junk --avgwf /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/output.mean.dat

$Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz --i /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc --sum /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/sum.junk --avgwf /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/output.mean.dat sysname Linux hostname 67a8343f93b7 machine x86_64 user UNKNOWN UseRobust 0 Loading /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz Loading /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc Voxel Volume is 1.33484 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation

Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/output.mean.dat mri_segstats done mris_calc -o /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc mul 1.04810600101798779476 Saving result to '/tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc' (type = MINC ) [ ok ] mri_convert /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc /tmp/tmp.MLt16FY2Ij/T1_N3.mgz --like /tmp/tmp.MLt16FY2Ij/T1.mgz --conform mri_convert.bin /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc /tmp/tmp.MLt16FY2Ij/T1_N3.mgz --like /tmp/tmp.MLt16FY2Ij/T1.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) INFO: transform src into the like-volume: /tmp/tmp.MLt16FY2Ij/T1.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to /tmp/tmp.MLt16FY2Ij/T1_N3.mgz...

Sun Sep 5 13:49:03 UTC 2021 mri_nu_correct.mni done

mri_convert /tmp/tmp.MLt16FY2Ij/T1_N3.mgz /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz mri_convert.bin /tmp/tmp.MLt16FY2Ij/T1_N3.mgz /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /tmp/tmp.MLt16FY2Ij/T1_N3.mgz... TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz...

mri_normalize -g 1 -mprage /tmp/tmp.MLt16FY2Ij/T1_N3.mgz /tmp/tmp.MLt16FY2Ij/T1_norm.mgz using max gradient = 1.000 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading from /tmp/tmp.MLt16FY2Ij/T1_N3.mgz... normalizing image... processing without aseg, no1d=0 MRInormInit(): no Talairach xform detected - using skull bounding box to determine origin MRInormalize(): MRIsplineNormalize(): npeaks = 20 Starting OpenSpline(): npoints = 20 building Voronoi diagram... performing soap bubble smoothing, sigma = 8...

Iterating 2 times

3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 70 (70), valley at 41 (41) csf peak at 36, setting threshold to 58 building Voronoi diagram... performing soap bubble smoothing, sigma = 8...

3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 71 (71), valley at 33 (33) csf peak at 36, setting threshold to 59 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to /tmp/tmp.MLt16FY2Ij/T1_norm.mgz 3D bias adjustment took 0 minutes and 58 seconds.

mri_convert /tmp/tmp.MLt16FY2Ij/T1_norm.mgz /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz mri_convert.bin /tmp/tmp.MLt16FY2Ij/T1_norm.mgz /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /tmp/tmp.MLt16FY2Ij/T1_norm.mgz... TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz...

Removing job directory...

Skull stripping T1 bet /INPUTS/T1.nii.gz /tmp/tmp.hh0vCEw4zT/T1_mask.nii.gz -R

epi_reg distorted b0 to T1 epi_reg --epi=/INPUTS/b0.nii.gz --t1=/INPUTS/T1.nii.gz --t1brain=/tmp/tmp.hh0vCEw4zT/T1_mask.nii.gz --out=/tmp/tmp.hh0vCEw4zT/epi_reg_d Running FAST segmentation FLIRT pre-alignment Running BBR 0.979595 0.997454 -0.001571 -0.071297 0.000000 -0.003473 0.997502 -0.070558 0.000000 0.071230 0.070626 0.994956 0.000000 -0.919118 -9.448610 17.206195 1.000000

converting FSL transform to ANTS transform c3d_affine_tool -ref /INPUTS/T1.nii.gz -src /INPUTS/b0.nii.gz /tmp/tmp.hh0vCEw4zT/epi_reg_d.mat -fsl2ras -oitk /tmp/tmp.hh0vCEw4zT/epi_reg_d_ANTS.txt

ANTS syn registration antsRegistrationSyNQuick.sh -d 3 -f /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz -m /INPUTS/T1.nii.gz -o /tmp/tmp.hh0vCEw4zT/ANTS

Mapping parameters

ANTSPATH is /extra/ANTS/bin/ants/bin/

Dimensionality: 3 Output name prefix: /tmp/tmp.hh0vCEw4zT/ANTS Fixed images: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz Moving images: /INPUTS/T1.nii.gz Mask images:
Initial transforms:
Number of threads: 1 Spline distance: 26 Transform type: s MI histogram bins: 32 Precision: d Use histogram matching 0

antsRegistration call:

/extra/ANTS/bin/ants/bin//antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [/tmp/tmp.hh0vCEw4zT/ANTS,/tmp/tmp.hh0vCEw4zT/ANTSWarped.nii.gz,/tmp/tmp.hh0vCEw4zT/ANTSInverseWarped.nii.gz] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [0.005,0.995] --initial-moving-transform [/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1] --transform Rigid[0.1] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32,Regular,0.25] --convergence [1000x500x250x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[0.1] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32,Regular,0.25] --convergence [1000x500x250x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[0.1,3,0] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32] --convergence [100x70x50x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox

All_Command_lines_OK Using double precision for computations.

The composite transform comprises the following transforms (in order):

Center of mass alignment using fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz and moving image: /INPUTS/T1.nii.gz (type = Euler3DTransform) ============================================================================= number of levels = 4 number of levels = 4 number of levels = 4 fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz moving image: /INPUTS/T1.nii.gz fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz moving image: /INPUTS/T1.nii.gz fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz moving image: /INPUTS/T1.nii.gz Dimension = 3 Number of stages = 3 Use Histogram Matching false Winsorize image intensities true Lower quantile = 0.005 Upper quantile = 0.995 Stage 1 State Image metric = Mattes Fixed image = Image (0x425d5d0) RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 1630 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1431 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] Spacing: [1, 1, 1] Origin: [96, 132, -78] Direction: -1 0 0 0 -1 0 0 0 1

IndexToPointMatrix: -1 0 0 0 -1 0 0 0 1

PointToIndexMatrix: -1 0 0 0 -1 0 0 0 1

Inverse Direction: -1 0 0 0 -1 0 0 0 1

PixelContainer: ImportImageContainer (0x4250c60) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 1428 Debug: Off Object Name: Observers: none Pointer: 0x7fedc5af5010 Container manages memory: true Size: 8530021 Capacity: 8530021

 Moving image = Image (0x4283c90)

RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 1631 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1628 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [176, 240, 256] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [176, 240, 256] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [176, 240, 256] Spacing: [1.2, 1.05469, 1.05469] Origin: [105.025, 97.9332, -133.507] Direction: -1 0 0 0 -1 0 0 0 1

IndexToPointMatrix: -1.2 0 0 0 -1.05469 0 0 0 1.05469

PointToIndexMatrix: -0.833333 0 0 0 -0.948148 0 0 0 0.948148

Inverse Direction: -1 0 0 0 -1 0 0 0 1

PixelContainer: ImportImageContainer (0x425c530) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 1625 Debug: Off Object Name: Observers: none Pointer: 0x7fedc0874010 Container manages memory: true Size: 10813440 Capacity: 10813440

 Weighting = 1
 Sampling strategy = regular
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 0.25

Transform = Rigid Gradient step = 0.1 Update field sigma (voxel space) = 0 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Stage 2 State Image metric = Mattes Fixed image = Image (0x4261710) RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 2024 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1825 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] Spacing: [1, 1, 1] Origin: [96, 132, -78] Direction: -1 0 0 0 -1 0 0 0 1

IndexToPointMatrix: -1 0 0 0 -1 0 0 0 1

PointToIndexMatrix: -1 0 0 0 -1 0 0 0 1

Inverse Direction: -1 0 0 0 -1 0 0 0 1

PixelContainer: ImportImageContainer (0x425cc70) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 1822 Debug: Off Object Name: Observers: none Pointer: 0x7fedbc75f010 Container manages memory: true Size: 8530021 Capacity: 8530021

 Moving image = Image (0x4279ae0)

RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 2025 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2022 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [176, 240, 256] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [176, 240, 256] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [176, 240, 256] Spacing: [1.2, 1.05469, 1.05469] Origin: [105.025, 97.9332, -133.507] Direction: -1 0 0 0 -1 0 0 0 1

IndexToPointMatrix: -1.2 0 0 0 -1.05469 0 0 0 1.05469

PointToIndexMatrix: -0.833333 0 0 0 -0.948148 0 0 0 0.948148

Inverse Direction: -1 0 0 0 -1 0 0 0 1

PixelContainer: ImportImageContainer (0x4277a60) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 2019 Debug: Off Object Name: Observers: none Pointer: 0x7fedb74de010 Container manages memory: true Size: 10813440 Capacity: 10813440

 Weighting = 1
 Sampling strategy = regular
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 0.25

Transform = Affine Gradient step = 0.1 Update field sigma (voxel space) = 0 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Stage 3 State Image metric = Mattes Fixed image = Image (0x4275810) RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 2418 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2219 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] Spacing: [1, 1, 1] Origin: [96, 132, -78] Direction: -1 0 0 0 -1 0 0 0 1

IndexToPointMatrix: -1 0 0 0 -1 0 0 0 1

PointToIndexMatrix: -1 0 0 0 -1 0 0 0 1

Inverse Direction: -1 0 0 0 -1 0 0 0 1

PixelContainer: ImportImageContainer (0x42781b0) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 2216 Debug: Off Object Name: Observers: none Pointer: 0x7fedb33c9010 Container manages memory: true Size: 8530021 Capacity: 8530021

 Moving image = Image (0x427a010)

RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 2419 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2416 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [176, 240, 256] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [176, 240, 256] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [176, 240, 256] Spacing: [1.2, 1.05469, 1.05469] Origin: [105.025, 97.9332, -133.507] Direction: -1 0 0 0 -1 0 0 0 1

IndexToPointMatrix: -1.2 0 0 0 -1.05469 0 0 0 1.05469

PointToIndexMatrix: -0.833333 0 0 0 -0.948148 0 0 0 0.948148

Inverse Direction: -1 0 0 0 -1 0 0 0 1

PixelContainer: ImportImageContainer (0x427c1e0) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 2413 Debug: Off Object Name: Observers: none Pointer: 0x7fedae148010 Container manages memory: true Size: 10813440 Capacity: 10813440

 Weighting = 1
 Sampling strategy = none
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 1

Transform = SyN Gradient step = 0.1 Update field sigma (voxel space) = 3 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Registration using 3 total stages.

Stage 0 iterations = 1000x500x250x0 convergence threshold = 1e-06 convergence window size = 10 number of levels = 4 using the Mattes MI metric (number of bins = 32, weight = 1) preprocessing: winsorizing the image intensities Shrink factors (level 1 out of 4): [8, 8, 8] Shrink factors (level 2 out of 4): [4, 4, 4] Shrink factors (level 3 out of 4): [2, 2, 2] Shrink factors (level 4 out of 4): [1, 1, 1] smoothing sigmas per level: [3, 2, 1, 0] regular sampling (percentage = 0.25)

*** Running Euler3DTransform registration ***

DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -4.410765970967e-01, 1.797693134862e+308, 1.2625e+00, 1.2625e+00, 2DIAGNOSTIC, 2, -4.423822313012e-01, 1.797693134862e+308, 1.2719e+00, 9.4199e-03, 2DIAGNOSTIC, 3, -4.449666839466e-01, 1.797693134862e+308, 1.2816e+00, 9.7101e-03, 2DIAGNOSTIC, 4, -4.499506741078e-01, 1.797693134862e+308, 1.2916e+00, 9.9790e-03, 2DIAGNOSTIC, 5, -4.597544450515e-01, 1.797693134862e+308, 1.3021e+00, 1.0465e-02, 2DIAGNOSTIC, 6, -4.723994958535e-01, 1.797693134862e+308, 1.3119e+00, 9.8310e-03, 2DIAGNOSTIC, 7, -5.091388277743e-01, 1.797693134862e+308, 1.3216e+00, 9.7330e-03, 2DIAGNOSTIC, 8, -5.600894377160e-01, 1.797693134862e+308, 1.3333e+00, 1.1668e-02, 2DIAGNOSTIC, 9, -6.114615918207e-01, 1.797693134862e+308, 1.3470e+00, 1.3692e-02, 2DIAGNOSTIC, 10, -6.118732360369e-01, 2.437639890189e-02, 1.3596e+00, 1.2615e-02, 2DIAGNOSTIC, 11, -6.152986184714e-01, 2.453910164489e-02, 1.3693e+00, 9.7289e-03, 2DIAGNOSTIC, 12, -6.210374732157e-01, 2.280819562927e-02, 1.3818e+00, 1.2460e-02, 2DIAGNOSTIC, 13, -6.238187400031e-01, 1.952964947968e-02, 1.3933e+00, 1.1520e-02, 2DIAGNOSTIC, 14, -6.251314087618e-01, 1.526227456698e-02, 1.4048e+00, 1.1473e-02, 2DIAGNOSTIC, 15, -6.260156852704e-01, 1.067569397690e-02, 1.4195e+00, 1.4765e-02, 2DIAGNOSTIC, 16, -6.262955668545e-01, 6.208466862358e-03, 1.4297e+00, 1.0195e-02, 2DIAGNOSTIC, 17, -6.271796514909e-01, 2.885175772140e-03, 1.4393e+00, 9.5441e-03, 2DIAGNOSTIC, 18, -6.276740024717e-01, 1.134960852402e-03, 1.4502e+00, 1.0887e-02, 2DIAGNOSTIC, 19, -6.279585009969e-01, 8.716403599017e-04, 1.4605e+00, 1.0338e-02, 2DIAGNOSTIC, 20, -6.282505981325e-01, 5.753390034980e-04, 1.4753e+00, 1.4753e-02, 2DIAGNOSTIC, 21, -6.288832125246e-01, 3.514813846319e-04, 1.4920e+00, 1.6792e-02, 2DIAGNOSTIC, 22, -6.289208179932e-01, 2.471179574167e-04, 1.5053e+00, 1.3211e-02, 2DIAGNOSTIC, 23, -6.289260724057e-01, 1.896418691596e-04, 1.5180e+00, 1.2727e-02, 2DIAGNOSTIC, 24, -6.289017332905e-01, 1.463556554922e-04, 1.5278e+00, 9.8171e-03, 2DIAGNOSTIC, 25, -6.289107641811e-01, 1.110052233278e-04, 1.5375e+00, 9.6722e-03, 2DIAGNOSTIC, 26, -6.289253120247e-01, 7.339690511507e-05, 1.5495e+00, 1.2051e-02, 2DIAGNOSTIC, 27, -6.289290465909e-01, 4.798702424923e-05, 1.5616e+00, 1.2101e-02, 2DIAGNOSTIC, 28, -6.289362443045e-01, 2.900235438224e-05, 1.5783e+00, 1.6679e-02, 2DIAGNOSTIC, 29, -6.289372194823e-01, 1.361649651306e-05, 1.5905e+00, 1.2196e-02, 2DIAGNOSTIC, 30, -6.289450770550e-01, 2.736274509363e-06, 1.6022e+00, 1.1672e-02, 2DIAGNOSTIC, 31, -6.289504691447e-01, 2.410004584709e-06, 1.6150e+00, 1.2787e-02, 2DIAGNOSTIC, 32, -6.289555433451e-01, 2.619728241067e-06, 1.6282e+00, 1.3222e-02, 2DIAGNOSTIC, 33, -6.289725636287e-01, 3.008435924594e-06, 1.6413e+00, 1.3152e-02, 2DIAGNOSTIC, 34, -6.290094199620e-01, 3.356495151818e-06, 1.6550e+00, 1.3666e-02, 2DIAGNOSTIC, 35, -6.290740955870e-01, 4.456112066085e-06, 1.6654e+00, 1.0442e-02, 2DIAGNOSTIC, 36, -6.290941032118e-01, 5.603409865561e-06, 1.6774e+00, 1.1938e-02, 2DIAGNOSTIC, 37, -6.291089373412e-01, 6.489611208214e-06, 1.6947e+00, 1.7294e-02, 2DIAGNOSTIC, 38, -6.291091454909e-01, 6.896591896816e-06, 1.7063e+00, 1.1625e-02, 2DIAGNOSTIC, 39, -6.291116132739e-01, 6.745514219492e-06, 1.7162e+00, 9.8870e-03, 2DIAGNOSTIC, 40, -6.291133726902e-01, 6.145552684446e-06, 1.7263e+00, 1.0066e-02, 2DIAGNOSTIC, 41, -6.291139699721e-01, 5.140484017622e-06, 1.7377e+00, 1.1443e-02, 2DIAGNOSTIC, 42, -6.291151752390e-01, 3.853021771125e-06, 1.7471e+00, 9.4440e-03, 2DIAGNOSTIC, 43, -6.291175555854e-01, 2.551180947302e-06, 1.7568e+00, 9.6250e-03, 2DIAGNOSTIC, 44, -6.291274666281e-01, 1.630885231599e-06, 1.7693e+00, 1.2550e-02, 2DIAGNOSTIC, 45, -6.291332273601e-01, 1.405296763159e-06, 1.7857e+00, 1.6419e-02, 2DIAGNOSTIC, 46, -6.291359610077e-01, 1.356470152390e-06, 1.7986e+00, 1.2822e-02, 2DIAGNOSTIC, 47, -6.291400399371e-01, 1.441542601295e-06, 1.8094e+00, 1.0835e-02, 2DIAGNOSTIC, 48, -6.291478026942e-01, 1.530175043708e-06, 1.8192e+00, 9.8200e-03, 2DIAGNOSTIC, 49, -6.292033412918e-01, 2.090488864702e-06, 1.8305e+00, 1.1243e-02, 2DIAGNOSTIC, 50, -6.292427810428e-01, 2.866370079770e-06, 1.8409e+00, 1.0477e-02, 2DIAGNOSTIC, 51, -6.293786660099e-01, 4.658412185932e-06, 1.8544e+00, 1.3472e-02, 2DIAGNOSTIC, 52, -6.298575708116e-01, 1.031988789379e-05, 1.8715e+00, 1.7128e-02, 2DIAGNOSTIC, 53, -6.299198478421e-01, 1.529815704952e-05, 1.8812e+00, 9.6521e-03, 2DIAGNOSTIC, 54, -6.300788499055e-01, 2.019106678284e-05, 1.8925e+00, 1.1281e-02, 2DIAGNOSTIC, 55, -6.301142073141e-01, 2.339440033855e-05, 1.9019e+00, 9.4719e-03, 2DIAGNOSTIC, 56, -6.301479856543e-01, 2.458463506988e-05, 1.9139e+00, 1.1943e-02, 2DIAGNOSTIC, 57, -6.302578808155e-01, 2.431850095239e-05, 1.9266e+00, 1.2761e-02, 2DIAGNOSTIC, 58, -6.302547487738e-01, 2.178255771499e-05, 1.9408e+00, 1.4126e-02, 2DIAGNOSTIC, 59, -6.302564268012e-01, 1.780931282842e-05, 1.9533e+00, 1.2559e-02, 2DIAGNOSTIC, 60, -6.302566407378e-01, 1.265051808145e-05, 1.9689e+00, 1.5543e-02, 2DIAGNOSTIC, 61, -6.302566427936e-01, 7.457511325516e-06, 1.9845e+00, 1.5658e-02, 2DIAGNOSTIC, 62, -6.302566429038e-01, 5.375581895690e-06, 1.9996e+00, 1.5060e-02, 2DIAGNOSTIC, 63, -6.302566429084e-01, 3.328856213767e-06, 2.0189e+00, 1.9345e-02, 2DIAGNOSTIC, 64, -6.302566429085e-01, 2.247286236125e-06, 2.0319e+00, 1.2927e-02, 2DIAGNOSTIC, 65, -6.302566429085e-01, 1.289444910721e-06, 2.0474e+00, 1.5509e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -5.375735157177e-01, 1.797693134862e+308, 3.3821e+00, 1.3347e+00, 2DIAGNOSTIC, 2, -5.379543106374e-01, 1.797693134862e+308, 3.4539e+00, 7.1822e-02, 2DIAGNOSTIC, 3, -5.383595095561e-01, 1.797693134862e+308, 3.5257e+00, 7.1758e-02, 2DIAGNOSTIC, 4, -5.386022189964e-01, 1.797693134862e+308, 3.5965e+00, 7.0866e-02, 2DIAGNOSTIC, 5, -5.387260111326e-01, 1.797693134862e+308, 3.6675e+00, 7.0978e-02, 2DIAGNOSTIC, 6, -5.389739999080e-01, 1.797693134862e+308, 3.7377e+00, 7.0153e-02, 2DIAGNOSTIC, 7, -5.393971637608e-01, 1.797693134862e+308, 3.8061e+00, 6.8405e-02, 2DIAGNOSTIC, 8, -5.418411004627e-01, 1.797693134862e+308, 3.8945e+00, 8.8403e-02, 2DIAGNOSTIC, 9, -5.423700001849e-01, 1.797693134862e+308, 3.9726e+00, 7.8132e-02, 2DIAGNOSTIC, 10, -5.425480191320e-01, 6.187978949828e-04, 4.0574e+00, 8.4758e-02, 2DIAGNOSTIC, 11, -5.433346058127e-01, 6.349298994615e-04, 4.1531e+00, 9.5735e-02, 2DIAGNOSTIC, 12, -5.435664262932e-01, 6.169873237681e-04, 4.2358e+00, 8.2699e-02, 2DIAGNOSTIC, 13, -5.436188194727e-01, 5.632455380554e-04, 4.3036e+00, 6.7844e-02, 2DIAGNOSTIC, 14, -5.437255985528e-01, 4.794838287238e-04, 4.3901e+00, 8.6429e-02, 2DIAGNOSTIC, 15, -5.439009225737e-01, 3.749610215984e-04, 4.4556e+00, 6.5555e-02, 2DIAGNOSTIC, 16, -5.439704595948e-01, 2.600847463210e-04, 4.5311e+00, 7.5479e-02, 2DIAGNOSTIC, 17, -5.440639050477e-01, 1.489516400090e-04, 4.5985e+00, 6.7359e-02, 2DIAGNOSTIC, 18, -5.441139109848e-01, 1.093268758798e-04, 4.6665e+00, 6.8033e-02, 2DIAGNOSTIC, 19, -5.441569274778e-01, 7.989810951928e-05, 4.7317e+00, 6.5261e-02, 2DIAGNOSTIC, 20, -5.443149500235e-01, 5.440499952248e-05, 4.8058e+00, 7.4026e-02, 2DIAGNOSTIC, 21, -5.451073403747e-01, 6.562236613097e-05, 4.8990e+00, 9.3195e-02, 2DIAGNOSTIC, 22, -5.459058541905e-01, 9.391599929915e-05, 4.9755e+00, 7.6535e-02, 2DIAGNOSTIC, 23, -5.460012657357e-01, 1.141807743993e-04, 5.0558e+00, 8.0282e-02, 2DIAGNOSTIC, 24, -5.460928416604e-01, 1.268465781107e-04, 5.1231e+00, 6.7326e-02, 2DIAGNOSTIC, 25, -5.467188400475e-01, 1.436115420353e-04, 5.1974e+00, 7.4274e-02, 2DIAGNOSTIC, 26, -5.474772938542e-01, 1.616848484832e-04, 5.2745e+00, 7.7137e-02, 2DIAGNOSTIC, 27, -5.478318323640e-01, 1.714413205014e-04, 5.3656e+00, 9.1111e-02, 2DIAGNOSTIC, 28, -5.482311411385e-01, 1.731667132696e-04, 5.4407e+00, 7.5087e-02, 2DIAGNOSTIC, 29, -5.482650158897e-01, 1.602604333125e-04, 5.5060e+00, 6.5318e-02, 2DIAGNOSTIC, 30, -5.483017164784e-01, 1.362984141214e-04, 5.5745e+00, 6.8462e-02, 2DIAGNOSTIC, 31, -5.483274436389e-01, 1.143741517831e-04, 5.6437e+00, 6.9152e-02, 2DIAGNOSTIC, 32, -5.485508243643e-01, 9.975858544491e-05, 5.7274e+00, 8.3783e-02, 2DIAGNOSTIC, 33, -5.487389561744e-01, 8.121730399931e-05, 5.8343e+00, 1.0690e-01, 2DIAGNOSTIC, 34, -5.487576665720e-01, 5.773855729670e-05, 5.9145e+00, 8.0172e-02, 2DIAGNOSTIC, 35, -5.487921905835e-01, 3.997649264098e-05, 6.0046e+00, 9.0084e-02, 2DIAGNOSTIC, 36, -5.487935315078e-01, 3.045796470585e-05, 6.0828e+00, 7.8253e-02, 2DIAGNOSTIC, 37, -5.487942205690e-01, 2.345388292104e-05, 6.1584e+00, 7.5539e-02, 2DIAGNOSTIC, 38, -5.487940262148e-01, 2.010184638402e-05, 6.2239e+00, 6.5464e-02, 2DIAGNOSTIC, 39, -5.487914956363e-01, 1.553112482353e-05, 6.2888e+00, 6.4940e-02, 2DIAGNOSTIC, 40, -5.487990473378e-01, 1.042317953349e-05, 6.3633e+00, 7.4477e-02, 2DIAGNOSTIC, 41, -5.488061075390e-01, 5.011305655386e-06, 6.4384e+00, 7.5115e-02, 2DIAGNOSTIC, 42, -5.488052951067e-01, 2.159336529695e-06, 6.5126e+00, 7.4212e-02, 2DIAGNOSTIC, 43, -5.488086290920e-01, 1.630905349260e-06, 6.5772e+00, 6.4629e-02, 2DIAGNOSTIC, 44, -5.488111111717e-01, 1.281945899427e-06, 6.6513e+00, 7.4119e-02, 2DIAGNOSTIC, 45, -5.488199299305e-01, 1.395081640026e-06, 6.7343e+00, 8.2997e-02, 2DIAGNOSTIC, 46, -5.488193325582e-01, 1.442033506049e-06, 6.8001e+00, 6.5801e-02, 2DIAGNOSTIC, 47, -5.488192603297e-01, 1.425020433796e-06, 6.8755e+00, 7.5390e-02, 2DIAGNOSTIC, 48, -5.488195476491e-01, 1.342335184652e-06, 6.9399e+00, 6.4415e-02, 2DIAGNOSTIC, 49, -5.488220599060e-01, 1.195455112856e-06, 7.0144e+00, 7.4460e-02, 2DIAGNOSTIC, 50, -5.488259905203e-01, 1.118129649261e-06, 7.0793e+00, 6.4925e-02, 2DIAGNOSTIC, 51, -5.488283633583e-01, 1.094376498208e-06, 7.1531e+00, 7.3784e-02, 2DIAGNOSTIC, 52, -5.488340709304e-01, 1.076775595348e-06, 7.2201e+00, 6.6990e-02, 2DIAGNOSTIC, 53, -5.488384686728e-01, 1.090931951046e-06, 7.2998e+00, 7.9732e-02, 2DIAGNOSTIC, 54, -5.488399104570e-01, 1.092349772358e-06, 7.3715e+00, 7.1639e-02, 2DIAGNOSTIC, 55, -5.488482797362e-01, 1.208783132048e-06, 7.4499e+00, 7.8393e-02, 2DIAGNOSTIC, 56, -5.488523469740e-01, 1.291357776691e-06, 7.5239e+00, 7.4069e-02, 2DIAGNOSTIC, 57, -5.488535935679e-01, 1.312276780373e-06, 7.6036e+00, 7.9621e-02, 2DIAGNOSTIC, 58, -5.488606787010e-01, 1.326974724894e-06, 7.6802e+00, 7.6607e-02, 2DIAGNOSTIC, 59, -5.488832841402e-01, 1.486510645840e-06, 7.7497e+00, 6.9578e-02, 2DIAGNOSTIC, 60, -5.488870635520e-01, 1.611254024293e-06, 7.8356e+00, 8.5888e-02, 2DIAGNOSTIC, 61, -5.489013714658e-01, 1.771171544162e-06, 7.9120e+00, 7.6371e-02, 2DIAGNOSTIC, 62, -5.488866368537e-01, 1.729889959490e-06, 7.9855e+00, 7.3502e-02, 2DIAGNOSTIC, 63, -5.489454879777e-01, 2.100058755710e-06, 8.0712e+00, 8.5667e-02, 2DIAGNOSTIC, 64, -5.489481633908e-01, 2.320680183129e-06, 8.1660e+00, 9.4843e-02, 2DIAGNOSTIC, 65, -5.489531260946e-01, 2.467406186091e-06, 8.2449e+00, 7.8916e-02, 2DIAGNOSTIC, 66, -5.489574830167e-01, 2.494158235038e-06, 8.3112e+00, 6.6258e-02, 2DIAGNOSTIC, 67, -5.489599314043e-01, 2.355777910041e-06, 8.3809e+00, 6.9673e-02, 2DIAGNOSTIC, 68, -5.489670699219e-01, 2.139622479563e-06, 8.4603e+00, 7.9436e-02, 2DIAGNOSTIC, 69, -5.489621075837e-01, 1.897533303189e-06, 8.5478e+00, 8.7461e-02, 2DIAGNOSTIC, 70, -5.489635288269e-01, 1.566660662882e-06, 8.6123e+00, 6.4536e-02, 2DIAGNOSTIC, 71, -5.489887310858e-01, 1.435423837284e-06, 8.6860e+00, 7.3725e-02, 2DIAGNOSTIC, 72, -5.489996716094e-01, 1.167752412743e-06, 8.9177e+00, 2.3165e-01, 2DIAGNOSTIC, 73, -5.489996715959e-01, 1.256438431081e-06, 8.9822e+00, 6.4525e-02, 2DIAGNOSTIC, 74, -5.489996722396e-01, 1.286334953408e-06, 9.0468e+00, 6.4619e-02, 2DIAGNOSTIC, 75, -5.489996733279e-01, 1.268044939566e-06, 9.1120e+00, 6.5165e-02, 2DIAGNOSTIC, 76, -5.489996751677e-01, 1.195095087766e-06, 9.1768e+00, 6.4856e-02, 2DIAGNOSTIC, 77, -5.489996782767e-01, 1.062281525513e-06, 9.2441e+00, 6.7270e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -4.881886668021e-01, 1.797693134862e+308, 1.1051e+01, 1.8071e+00, 2DIAGNOSTIC, 2, -4.884363975150e-01, 1.797693134862e+308, 1.1508e+01, 4.5700e-01, 2DIAGNOSTIC, 3, -4.887603663610e-01, 1.797693134862e+308, 1.1969e+01, 4.6045e-01, 2DIAGNOSTIC, 4, -4.891038893838e-01, 1.797693134862e+308, 1.2389e+01, 4.2020e-01, 2DIAGNOSTIC, 5, -4.893076470659e-01, 1.797693134862e+308, 1.2816e+01, 4.2690e-01, 2DIAGNOSTIC, 6, -4.894981771070e-01, 1.797693134862e+308, 1.3260e+01, 4.4421e-01, 2DIAGNOSTIC, 7, -4.895480230677e-01, 1.797693134862e+308, 1.4012e+01, 7.5205e-01, 2DIAGNOSTIC, 8, -4.895510473075e-01, 1.797693134862e+308, 1.4760e+01, 7.4777e-01, 2DIAGNOSTIC, 9, -4.895508192635e-01, 1.797693134862e+308, 1.5261e+01, 5.0100e-01, 2DIAGNOSTIC, 10, -4.895500371489e-01, 1.849806681142e-04, 1.5819e+01, 5.5863e-01, 2DIAGNOSTIC, 11, -4.895504515085e-01, 1.211797573867e-04, 1.6379e+01, 5.5973e-01, 2DIAGNOSTIC, 12, -4.895500299620e-01, 6.922161396876e-05, 1.6883e+01, 5.0351e-01, 2DIAGNOSTIC, 13, -4.895495683510e-01, 3.350607468146e-05, 1.7321e+01, 4.3798e-01, 2DIAGNOSTIC, 14, -4.895491938608e-01, 1.420002916604e-05, 1.7894e+01, 5.7330e-01, 2DIAGNOSTIC, 15, -4.895482907303e-01, 4.050229066660e-06, 1.8393e+01, 4.9861e-01, 2DIAGNOSTIC, 16, -4.895473459247e-01, 1.825228455529e-06, 1.8891e+01, 4.9822e-01, 2DIAGNOSTIC, 17, -4.895474786827e-01, 1.581914902404e-06, 1.9328e+01, 4.3720e-01, 2DIAGNOSTIC, 18, -4.895465707808e-01, 1.460251058134e-06, 1.9829e+01, 5.0137e-01, 2DIAGNOSTIC, 19, -4.895462535201e-01, 1.364599561390e-06, 2.0327e+01, 4.9759e-01, 2DIAGNOSTIC, 20, -4.895466209930e-01, 1.295195149027e-06, 2.0810e+01, 4.8348e-01, 2DIAGNOSTIC, 21, -4.895460842768e-01, 1.256315515841e-06, 2.1278e+01, 4.6805e-01, 2DIAGNOSTIC, 22, -4.895459087450e-01, 1.229746238146e-06, 2.1793e+01, 5.1469e-01, 2DIAGNOSTIC, 23, -4.895464633634e-01, 1.228235655792e-06, 2.2294e+01, 5.0136e-01, 2DIAGNOSTIC, 24, -4.895464250350e-01, 1.231353658010e-06, 2.2738e+01, 4.4352e-01, 2DIAGNOSTIC, 25, -4.895467485402e-01, 1.229998934690e-06, 2.3237e+01, 4.9896e-01, 2DIAGNOSTIC, 26, -4.895479426840e-01, 1.238068596275e-06, 2.3732e+01, 4.9517e-01, 2DIAGNOSTIC, 27, -4.895480880791e-01, 1.250187382174e-06, 2.4421e+01, 6.8900e-01, 2DIAGNOSTIC, 28, -4.895482774781e-01, 1.240019761067e-06, 2.4933e+01, 5.1235e-01, 2DIAGNOSTIC, 29, -4.895478324214e-01, 1.205367784168e-06, 2.5394e+01, 4.6026e-01, 2DIAGNOSTIC, 30, -4.895462822475e-01, 1.140485361019e-06, 2.5783e+01, 3.8899e-01, 2DIAGNOSTIC, 31, -4.895459743568e-01, 1.056993797141e-06, 2.6237e+01, 4.5454e-01, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -4.537528647448e-01, 1.797693134862e+308, 2.9955e+01, 3.7181e+00, Elapsed time (stage 0): 3.0751e+01

Stage 1 iterations = 1000x500x250x0 convergence threshold = 1.0000e-06 convergence window size = 10 number of levels = 4 using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) preprocessing: winsorizing the image intensities Shrink factors (level 1 out of 4): [8, 8, 8] Shrink factors (level 2 out of 4): [4, 4, 4] Shrink factors (level 3 out of 4): [2, 2, 2] Shrink factors (level 4 out of 4): [1, 1, 1] smoothing sigmas per level: [3, 2, 1, 0] regular sampling (percentage = 2.5000e-01)

*** Running AffineTransform registration ***

DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -6.193126967070e-01, 1.797693134862e+308, 1.2758e+00, 1.2758e+00, 2DIAGNOSTIC, 2, -6.208251559265e-01, 1.797693134862e+308, 1.2850e+00, 9.2468e-03, 2DIAGNOSTIC, 3, -6.235808177764e-01, 1.797693134862e+308, 1.2949e+00, 9.8770e-03, 2DIAGNOSTIC, 4, -6.285136547121e-01, 1.797693134862e+308, 1.3047e+00, 9.7871e-03, 2DIAGNOSTIC, 5, -6.355983502794e-01, 1.797693134862e+308, 1.3158e+00, 1.1081e-02, 2DIAGNOSTIC, 6, -6.465725121461e-01, 1.797693134862e+308, 1.3280e+00, 1.2165e-02, 2DIAGNOSTIC, 7, -6.640971114875e-01, 1.797693134862e+308, 1.3432e+00, 1.5286e-02, 2DIAGNOSTIC, 8, -6.992803930490e-01, 1.797693134862e+308, 1.3616e+00, 1.8356e-02, 2DIAGNOSTIC, 9, -7.004628080453e-01, 1.797693134862e+308, 1.3727e+00, 1.1115e-02, 2DIAGNOSTIC, 10, -7.024049627269e-01, 9.747162191178e-03, 1.3830e+00, 1.0238e-02, 2DIAGNOSTIC, 11, -7.048401131760e-01, 9.260854696031e-03, 1.3931e+00, 1.0107e-02, 2DIAGNOSTIC, 12, -7.086363714883e-01, 8.207046309228e-03, 1.4044e+00, 1.1330e-02, 2DIAGNOSTIC, 13, -7.157186315616e-01, 6.886618658119e-03, 1.4144e+00, 1.0017e-02, 2DIAGNOSTIC, 14, -7.195115826694e-01, 5.405736307285e-03, 1.4241e+00, 9.6691e-03, 2DIAGNOSTIC, 15, -7.231820577958e-01, 3.958703678672e-03, 1.4358e+00, 1.1698e-02, 2DIAGNOSTIC, 16, -7.277313093686e-01, 2.747935497616e-03, 1.4494e+00, 1.3595e-02, 2DIAGNOSTIC, 17, -7.314680266874e-01, 1.932843910938e-03, 1.4607e+00, 1.1345e-02, 2DIAGNOSTIC, 18, -7.398563586368e-01, 2.039598754800e-03, 1.4717e+00, 1.0975e-02, 2DIAGNOSTIC, 19, -7.564364938543e-01, 2.325932259755e-03, 1.4813e+00, 9.6440e-03, 2DIAGNOSTIC, 20, -7.727527036655e-01, 2.731705379863e-03, 1.4964e+00, 1.5111e-02, 2DIAGNOSTIC, 21, -7.802756276189e-01, 3.029936046885e-03, 1.5067e+00, 1.0232e-02, 2DIAGNOSTIC, 22, -7.848049505074e-01, 3.170227639062e-03, 1.5176e+00, 1.0967e-02, 2DIAGNOSTIC, 23, -7.884385309088e-01, 3.189717789074e-03, 1.5310e+00, 1.3314e-02, 2DIAGNOSTIC, 24, -8.000590712378e-01, 3.160967326248e-03, 1.5450e+00, 1.3999e-02, 2DIAGNOSTIC, 25, -8.051697095642e-01, 2.970593790306e-03, 1.5597e+00, 1.4752e-02, 2DIAGNOSTIC, 26, -8.094522682213e-01, 2.654853894532e-03, 1.5728e+00, 1.3059e-02, 2DIAGNOSTIC, 27, -8.169711103510e-01, 2.284002395736e-03, 1.5829e+00, 1.0117e-02, 2DIAGNOSTIC, 28, -8.314033097814e-01, 2.042719848365e-03, 1.5971e+00, 1.4240e-02, 2DIAGNOSTIC, 29, -8.343135770923e-01, 1.880485421633e-03, 1.6068e+00, 9.7139e-03, 2DIAGNOSTIC, 30, -8.363855777397e-01, 1.791505719185e-03, 1.6223e+00, 1.5474e-02, 2DIAGNOSTIC, 31, -8.388305215601e-01, 1.667077682639e-03, 1.6323e+00, 1.0008e-02, 2DIAGNOSTIC, 32, -8.433887689463e-01, 1.502543267322e-03, 1.6418e+00, 9.4538e-03, 2DIAGNOSTIC, 33, -8.531165357282e-01, 1.355898663269e-03, 1.6546e+00, 1.2810e-02, 2DIAGNOSTIC, 34, -8.563847153845e-01, 1.255068328835e-03, 1.6644e+00, 9.8619e-03, 2DIAGNOSTIC, 35, -8.620960284419e-01, 1.162104975106e-03, 1.6774e+00, 1.2940e-02, 2DIAGNOSTIC, 36, -8.703437982532e-01, 1.096194000202e-03, 1.6902e+00, 1.2826e-02, 2DIAGNOSTIC, 37, -8.733565303612e-01, 1.031769592327e-03, 1.7074e+00, 1.7230e-02, 2DIAGNOSTIC, 38, -8.735254822618e-01, 1.016529336246e-03, 1.7191e+00, 1.1710e-02, 2DIAGNOSTIC, 39, -8.742080980700e-01, 9.410939957850e-04, 1.7293e+00, 1.0186e-02, 2DIAGNOSTIC, 40, -8.748961207220e-01, 8.066365052673e-04, 1.7389e+00, 9.5608e-03, 2DIAGNOSTIC, 41, -8.754343343751e-01, 6.287458945398e-04, 1.7503e+00, 1.1400e-02, 2DIAGNOSTIC, 42, -8.759744489143e-01, 4.436245251174e-04, 1.7600e+00, 9.7249e-03, 2DIAGNOSTIC, 43, -8.771366701338e-01, 3.202103231666e-04, 1.7701e+00, 1.0119e-02, 2DIAGNOSTIC, 44, -8.803967515470e-01, 2.267806660699e-04, 1.7849e+00, 1.4764e-02, 2DIAGNOSTIC, 45, -8.820020530698e-01, 1.737140366165e-04, 1.8077e+00, 2.2807e-02, 2DIAGNOSTIC, 46, -8.820127137923e-01, 1.716950311403e-04, 1.8180e+00, 1.0336e-02, 2DIAGNOSTIC, 47, -8.820514751433e-01, 1.776377400247e-04, 1.8280e+00, 9.9468e-03, 2DIAGNOSTIC, 48, -8.821145962462e-01, 1.680762337024e-04, 1.8387e+00, 1.0735e-02, 2DIAGNOSTIC, 49, -8.822109297947e-01, 1.481913818775e-04, 1.8491e+00, 1.0395e-02, 2DIAGNOSTIC, 50, -8.823512050060e-01, 1.208578251969e-04, 1.8613e+00, 1.2139e-02, 2DIAGNOSTIC, 51, -8.825435393717e-01, 8.869663703981e-05, 1.8745e+00, 1.3203e-02, 2DIAGNOSTIC, 52, -8.827918711350e-01, 5.514345252553e-05, 1.8868e+00, 1.2331e-02, 2DIAGNOSTIC, 53, -8.830820369919e-01, 2.708597621099e-05, 1.8990e+00, 1.2205e-02, 2DIAGNOSTIC, 54, -8.834282611206e-01, 2.122466400214e-05, 1.9118e+00, 1.2810e-02, 2DIAGNOSTIC, 55, -8.837658107767e-01, 2.621513309173e-05, 1.9239e+00, 1.2039e-02, 2DIAGNOSTIC, 56, -8.842076035051e-01, 3.140875140071e-05, 1.9404e+00, 1.6597e-02, 2DIAGNOSTIC, 57, -8.843745980833e-01, 3.468705523938e-05, 1.9571e+00, 1.6657e-02, 2DIAGNOSTIC, 58, -8.845536548972e-01, 3.606004572835e-05, 1.9702e+00, 1.3055e-02, 2DIAGNOSTIC, 59, -8.847006661866e-01, 3.542992875627e-05, 1.9841e+00, 1.3923e-02, 2DIAGNOSTIC, 60, -8.849087857275e-01, 3.349866354086e-05, 1.9999e+00, 1.5862e-02, 2DIAGNOSTIC, 61, -8.850380202869e-01, 3.028809152525e-05, 2.0123e+00, 1.2375e-02, 2DIAGNOSTIC, 62, -8.851513552802e-01, 2.637893309923e-05, 2.0232e+00, 1.0915e-02, 2DIAGNOSTIC, 63, -8.857122825761e-01, 2.487540578331e-05, 2.0345e+00, 1.1256e-02, 2DIAGNOSTIC, 64, -8.868697684351e-01, 2.924608999944e-05, 2.0476e+00, 1.3060e-02, 2DIAGNOSTIC, 65, -8.876057281628e-01, 3.630843380708e-05, 2.0742e+00, 2.6654e-02, 2DIAGNOSTIC, 66, -8.876130626018e-01, 4.207264350153e-05, 2.0865e+00, 1.2252e-02, 2DIAGNOSTIC, 67, -8.876619702716e-01, 4.489972356396e-05, 2.0993e+00, 1.2849e-02, 2DIAGNOSTIC, 68, -8.877243975632e-01, 4.458979782795e-05, 2.1113e+00, 1.2017e-02, 2DIAGNOSTIC, 69, -8.877773742956e-01, 4.091619205510e-05, 2.1245e+00, 1.3173e-02, 2DIAGNOSTIC, 70, -8.878147698622e-01, 3.463872388704e-05, 2.1371e+00, 1.2584e-02, 2DIAGNOSTIC, 71, -8.878417394991e-01, 2.612876677583e-05, 2.1495e+00, 1.2403e-02, 2DIAGNOSTIC, 72, -8.878763031076e-01, 1.616490543671e-05, 2.1622e+00, 1.2686e-02, 2DIAGNOSTIC, 73, -8.879487899653e-01, 7.878011442742e-06, 2.1741e+00, 1.1927e-02, 2DIAGNOSTIC, 74, -8.880029655045e-01, 4.695510840574e-06, 2.1937e+00, 1.9653e-02, 2DIAGNOSTIC, 75, -8.880233151511e-01, 4.694129147777e-06, 2.2057e+00, 1.1992e-02, 2DIAGNOSTIC, 76, -8.880485646495e-01, 4.436265198549e-06, 2.2175e+00, 1.1752e-02, 2DIAGNOSTIC, 77, -8.881121798270e-01, 4.301969429049e-06, 2.2301e+00, 1.2610e-02, 2DIAGNOSTIC, 78, -8.881279497749e-01, 4.130944376650e-06, 2.2401e+00, 1.0035e-02, 2DIAGNOSTIC, 79, -8.881525110872e-01, 3.944141961533e-06, 2.2513e+00, 1.1114e-02, 2DIAGNOSTIC, 80, -8.882109504026e-01, 3.839794946047e-06, 2.2651e+00, 1.3874e-02, 2DIAGNOSTIC, 81, -8.882259949446e-01, 3.583008034923e-06, 2.2760e+00, 1.0922e-02, 2DIAGNOSTIC, 82, -8.882378452499e-01, 3.215789004571e-06, 2.2864e+00, 1.0335e-02, 2DIAGNOSTIC, 83, -8.882511764988e-01, 2.940517106836e-06, 2.2976e+00, 1.1256e-02, 2DIAGNOSTIC, 84, -8.883769773226e-01, 3.164455810436e-06, 2.3158e+00, 1.8129e-02, 2DIAGNOSTIC, 85, -8.884691897804e-01, 3.554456591580e-06, 2.3258e+00, 9.9921e-03, 2DIAGNOSTIC, 86, -8.884783717479e-01, 3.756888116031e-06, 2.3399e+00, 1.4137e-02, 2DIAGNOSTIC, 87, -8.884803706928e-01, 3.901479241052e-06, 2.3499e+00, 9.9730e-03, 2DIAGNOSTIC, 88, -8.884930939116e-01, 3.818397138179e-06, 2.3593e+00, 9.4280e-03, 2DIAGNOSTIC, 89, -8.884985588748e-01, 3.505702345407e-06, 2.3716e+00, 1.2339e-02, 2DIAGNOSTIC, 90, -8.885234501548e-01, 3.207076857643e-06, 2.3840e+00, 1.2346e-02, 2DIAGNOSTIC, 91, -8.885388983173e-01, 2.759893481216e-06, 2.3935e+00, 9.4831e-03, 2DIAGNOSTIC, 92, -8.885449902200e-01, 2.168083337804e-06, 2.4052e+00, 1.1705e-02, 2DIAGNOSTIC, 93, -8.885533403809e-01, 1.487442734680e-06, 2.4155e+00, 1.0377e-02, 2DIAGNOSTIC, 94, -8.885887578970e-01, 1.288672215849e-06, 2.4340e+00, 1.8463e-02, 2DIAGNOSTIC, 95, -8.885956679424e-01, 1.355196267252e-06, 2.4445e+00, 1.0445e-02, 2DIAGNOSTIC, 96, -8.885990020355e-01, 1.368643808793e-06, 2.4546e+00, 1.0192e-02, 2DIAGNOSTIC, 97, -8.886014462317e-01, 1.300770769375e-06, 2.4668e+00, 1.2148e-02, 2DIAGNOSTIC, 98, -8.886051727590e-01, 1.199951968144e-06, 2.4768e+00, 9.9940e-03, 2DIAGNOSTIC, 99, -8.886151611476e-01, 1.067802336368e-06, 2.4866e+00, 9.8300e-03, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -7.753026270574e-01, 1.797693134862e+308, 3.8156e+00, 1.3290e+00, 2DIAGNOSTIC, 2, -7.764075997968e-01, 1.797693134862e+308, 3.8893e+00, 7.3715e-02, 2DIAGNOSTIC, 3, -7.776949809188e-01, 1.797693134862e+308, 3.9629e+00, 7.3550e-02, 2DIAGNOSTIC, 4, -7.790685652039e-01, 1.797693134862e+308, 4.0357e+00, 7.2831e-02, 2DIAGNOSTIC, 5, -7.804940917597e-01, 1.797693134862e+308, 4.1073e+00, 7.1591e-02, 2DIAGNOSTIC, 6, -7.820545545103e-01, 1.797693134862e+308, 4.1764e+00, 6.9151e-02, 2DIAGNOSTIC, 7, -7.829836218790e-01, 1.797693134862e+308, 4.2545e+00, 7.8060e-02, 2DIAGNOSTIC, 8, -7.832335181040e-01, 1.797693134862e+308, 4.3333e+00, 7.8859e-02, 2DIAGNOSTIC, 9, -7.833131158387e-01, 1.797693134862e+308, 4.4659e+00, 1.3257e-01, 2DIAGNOSTIC, 10, -7.833149766506e-01, 7.322685750919e-04, 4.5391e+00, 7.3189e-02, 2DIAGNOSTIC, 11, -7.833413504065e-01, 5.409179901524e-04, 4.6130e+00, 7.3856e-02, 2DIAGNOSTIC, 12, -7.833713296702e-01, 3.671780760417e-04, 4.6865e+00, 7.3570e-02, 2DIAGNOSTIC, 13, -7.834015439084e-01, 2.240727730947e-04, 4.7602e+00, 7.3659e-02, 2DIAGNOSTIC, 14, -7.834318983718e-01, 1.175828770190e-04, 4.8338e+00, 7.3566e-02, 2DIAGNOSTIC, 15, -7.834963772326e-01, 5.020827594822e-05, 4.9082e+00, 7.4434e-02, 2DIAGNOSTIC, 16, -7.835718523151e-01, 2.350812721684e-05, 4.9816e+00, 7.3362e-02, 2DIAGNOSTIC, 17, -7.838730160345e-01, 2.412192028349e-05, 5.0651e+00, 8.3500e-02, 2DIAGNOSTIC, 18, -7.843383531173e-01, 3.686997573428e-05, 5.1690e+00, 1.0393e-01, 2DIAGNOSTIC, 19, -7.844585379231e-01, 4.867761009224e-05, 5.2424e+00, 7.3451e-02, 2DIAGNOSTIC, 20, -7.845020101285e-01, 5.586113908262e-05, 5.3260e+00, 8.3521e-02, 2DIAGNOSTIC, 21, -7.845373669651e-01, 5.846080506153e-05, 5.3991e+00, 7.3099e-02, 2DIAGNOSTIC, 22, -7.845693476412e-01, 5.644653374457e-05, 5.5337e+00, 1.3463e-01, 2DIAGNOSTIC, 23, -7.845719291399e-01, 4.985336122495e-05, 5.6078e+00, 7.4078e-02, 2DIAGNOSTIC, 24, -7.845750615476e-01, 3.978906658979e-05, 5.6930e+00, 8.5270e-02, 2DIAGNOSTIC, 25, -7.845780919486e-01, 2.802067550973e-05, 5.7762e+00, 8.3144e-02, 2DIAGNOSTIC, 26, -7.845799779981e-01, 1.569776386785e-05, 5.8492e+00, 7.3038e-02, 2DIAGNOSTIC, 27, -7.845813228591e-01, 6.835890260494e-06, 5.9219e+00, 7.2662e-02, 2DIAGNOSTIC, 28, -7.845842528101e-01, 4.114799697148e-06, 5.9957e+00, 7.3775e-02, 2DIAGNOSTIC, 29, -7.845909241035e-01, 2.883679288850e-06, 6.0703e+00, 7.4643e-02, 2DIAGNOSTIC, 30, -7.845990552899e-01, 2.180968343431e-06, 6.1440e+00, 7.3738e-02, 2DIAGNOSTIC, 31, -7.846162377672e-01, 2.021458834496e-06, 6.2171e+00, 7.3031e-02, 2DIAGNOSTIC, 32, -7.846633569063e-01, 2.671467704850e-06, 6.3105e+00, 9.3398e-02, 2DIAGNOSTIC, 33, -7.846786100827e-01, 3.307033827671e-06, 6.4348e+00, 1.2432e-01, 2DIAGNOSTIC, 34, -7.846805163761e-01, 3.738964727672e-06, 6.5080e+00, 7.3175e-02, 2DIAGNOSTIC, 35, -7.846810570525e-01, 3.924057060595e-06, 6.5921e+00, 8.4163e-02, 2DIAGNOSTIC, 36, -7.846829380040e-01, 3.848886553290e-06, 6.6654e+00, 7.3310e-02, 2DIAGNOSTIC, 37, -7.846890636635e-01, 3.561126436628e-06, 6.7431e+00, 7.7677e-02, 2DIAGNOSTIC, 38, -7.846917472943e-01, 3.081213809372e-06, 6.8162e+00, 7.3070e-02, 2DIAGNOSTIC, 39, -7.847032443312e-01, 2.587561652022e-06, 6.8904e+00, 7.4266e-02, 2DIAGNOSTIC, 40, -7.847186226695e-01, 2.163966636666e-06, 6.9742e+00, 8.3775e-02, 2DIAGNOSTIC, 41, -7.847252637145e-01, 1.828556533853e-06, 7.0887e+00, 1.1446e-01, 2DIAGNOSTIC, 42, -7.847254226531e-01, 1.814160292917e-06, 7.2134e+00, 1.2474e-01, 2DIAGNOSTIC, 43, -7.847254241151e-01, 1.829950232062e-06, 7.2964e+00, 8.2980e-02, 2DIAGNOSTIC, 44, -7.847254252441e-01, 1.756283771616e-06, 7.3794e+00, 8.2984e-02, 2DIAGNOSTIC, 45, -7.847254263027e-01, 1.589440733960e-06, 7.4522e+00, 7.2874e-02, 2DIAGNOSTIC, 46, -7.847254287357e-01, 1.359376200164e-06, 7.5255e+00, 7.3233e-02, 2DIAGNOSTIC, 47, -7.847254377123e-01, 1.124823615438e-06, 7.6073e+00, 8.1829e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -7.163432327507e-01, 1.797693134862e+308, 9.4489e+00, 1.8416e+00, 2DIAGNOSTIC, 2, -7.168073976698e-01, 1.797693134862e+308, 9.9147e+00, 4.6577e-01, 2DIAGNOSTIC, 3, -7.171444284536e-01, 1.797693134862e+308, 1.0381e+01, 4.6601e-01, 2DIAGNOSTIC, 4, -7.173811789909e-01, 1.797693134862e+308, 1.0844e+01, 4.6314e-01, 2DIAGNOSTIC, 5, -7.176640338847e-01, 1.797693134862e+308, 1.1267e+01, 4.2317e-01, 2DIAGNOSTIC, 6, -7.179670026738e-01, 1.797693134862e+308, 1.2041e+01, 7.7413e-01, 2DIAGNOSTIC, 7, -7.180042920608e-01, 1.797693134862e+308, 1.2542e+01, 5.0123e-01, 2DIAGNOSTIC, 8, -7.181429177240e-01, 1.797693134862e+308, 1.3053e+01, 5.1036e-01, 2DIAGNOSTIC, 9, -7.182520054790e-01, 1.797693134862e+308, 1.3555e+01, 5.0179e-01, 2DIAGNOSTIC, 10, -7.183304093957e-01, 1.731362983383e-04, 1.4053e+01, 4.9872e-01, 2DIAGNOSTIC, 11, -7.184791512909e-01, 1.306589181830e-04, 1.4586e+01, 5.3279e-01, 2DIAGNOSTIC, 12, -7.186390961619e-01, 1.042069877749e-04, 1.5230e+01, 6.4396e-01, 2DIAGNOSTIC, 13, -7.186693890468e-01, 8.376138708938e-05, 1.5704e+01, 4.7354e-01, 2DIAGNOSTIC, 14, -7.187866386818e-01, 6.877900644749e-05, 1.6268e+01, 5.6441e-01, 2DIAGNOSTIC, 15, -7.188551660402e-01, 5.876998514660e-05, 1.7106e+01, 8.3842e-01, 2DIAGNOSTIC, 16, -7.188567361555e-01, 5.232665098724e-05, 1.7572e+01, 4.6606e-01, 2DIAGNOSTIC, 17, -7.188631802602e-01, 4.297867265811e-05, 1.8042e+01, 4.6951e-01, 2DIAGNOSTIC, 18, -7.188718726784e-01, 3.410451009659e-05, 1.8511e+01, 4.6914e-01, 2DIAGNOSTIC, 19, -7.188824115460e-01, 2.565371094392e-05, 1.8931e+01, 4.1971e-01, 2DIAGNOSTIC, 20, -7.188950865104e-01, 1.755290874248e-05, 1.9340e+01, 4.0930e-01, 2DIAGNOSTIC, 21, -7.189132046331e-01, 1.183061261197e-05, 1.9754e+01, 4.1360e-01, 2DIAGNOSTIC, 22, -7.189395288963e-01, 9.039987921226e-06, 2.0168e+01, 4.1426e-01, 2DIAGNOSTIC, 23, -7.189934610240e-01, 7.178310167111e-06, 2.0711e+01, 5.4331e-01, 2DIAGNOSTIC, 24, -7.190021722995e-01, 6.955431171025e-06, 2.1293e+01, 5.8177e-01, 2DIAGNOSTIC, 25, -7.190112549113e-01, 7.460886068983e-06, 2.1705e+01, 4.1243e-01, 2DIAGNOSTIC, 26, -7.190206223323e-01, 7.517463109279e-06, 2.2120e+01, 4.1484e-01, 2DIAGNOSTIC, 27, -7.190496810910e-01, 7.487811107001e-06, 2.2708e+01, 5.8786e-01, 2DIAGNOSTIC, 28, -7.190627780165e-01, 7.152395607092e-06, 2.3120e+01, 4.1145e-01, 2DIAGNOSTIC, 29, -7.190841105571e-01, 6.707176459488e-06, 2.3586e+01, 4.6630e-01, 2DIAGNOSTIC, 30, -7.190889043365e-01, 5.997925843659e-06, 2.4053e+01, 4.6691e-01, 2DIAGNOSTIC, 31, -7.190892721991e-01, 5.103944986082e-06, 2.4521e+01, 4.6813e-01, 2DIAGNOSTIC, 32, -7.190898822202e-01, 4.194293358954e-06, 2.4989e+01, 4.6807e-01, 2DIAGNOSTIC, 33, -7.190901903486e-01, 3.682502988739e-06, 2.6427e+01, 1.4380e+00, 2DIAGNOSTIC, 34, -7.190901903474e-01, 3.043047658816e-06, 2.7889e+01, 1.4621e+00, 2DIAGNOSTIC, 35, -7.190901903474e-01, 2.344277742910e-06, 2.8417e+01, 5.2767e-01, 2DIAGNOSTIC, 36, -7.190901903474e-01, 1.646999852528e-06, 2.8946e+01, 5.2909e-01, 2DIAGNOSTIC, 37, -7.190901903474e-01, 1.224907206932e-06, 2.9503e+01, 5.5659e-01, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -6.508402762893e-01, 1.797693134862e+308, 3.4102e+01, 4.5992e+00, Elapsed time (stage 1): 3.4900e+01

Stage 2 iterations = 100x70x50x0 convergence threshold = 1.0000e-06 convergence window size = 10 number of levels = 4 using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) preprocessing: winsorizing the image intensities Shrink factors (level 1 out of 4): [8, 8, 8] Shrink factors (level 2 out of 4): [4, 4, 4] Shrink factors (level 3 out of 4): [2, 2, 2] Shrink factors (level 4 out of 4): [1, 1, 1] smoothing sigmas per level: [3, 2, 1, 0] Using default NONE metricSamplingStrategy

*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) ***

XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -8.376250713737e-01, 1.797693134862e+308, 1.2758e+00, 1.2758e+00, 1DIAGNOSTIC, 2, -8.531371504681e-01, 1.797693134862e+308, 1.3626e+00, 8.6750e-02, 1DIAGNOSTIC, 3, -8.657266390765e-01, 1.797693134862e+308, 1.4491e+00, 8.6489e-02, 1DIAGNOSTIC, 4, -8.772631143773e-01, 1.797693134862e+308, 1.5340e+00, 8.4912e-02, 1DIAGNOSTIC, 5, -8.875557456634e-01, 1.797693134862e+308, 1.6194e+00, 8.5472e-02, 1DIAGNOSTIC, 6, -8.959023452686e-01, 1.797693134862e+308, 1.7054e+00, 8.5987e-02, 1DIAGNOSTIC, 7, -9.028088292945e-01, 1.797693134862e+308, 1.7930e+00, 8.7578e-02, 1DIAGNOSTIC, 8, -9.079280957096e-01, 1.797693134862e+308, 1.8820e+00, 8.8978e-02, 1DIAGNOSTIC, 9, -9.118079133356e-01, 1.797693134862e+308, 1.9693e+00, 8.7339e-02, 1DIAGNOSTIC, 10, -9.153009185782e-01, 5.519369598901e-03, 2.0569e+00, 8.7603e-02, 1DIAGNOSTIC, 11, -9.183174472460e-01, 4.172842601609e-03, 2.1468e+00, 8.9845e-02, 1DIAGNOSTIC, 12, -9.213216056981e-01, 3.170717062608e-03, 2.2354e+00, 8.8610e-02, 1DIAGNOSTIC, 13, -9.244367179176e-01, 2.421199123735e-03, 2.3239e+00, 8.8491e-02, 1DIAGNOSTIC, 14, -9.270286162939e-01, 1.878580352587e-03, 2.4124e+00, 8.8506e-02, 1DIAGNOSTIC, 15, -9.289204563110e-01, 1.493487952103e-03, 2.5004e+00, 8.8053e-02, 1DIAGNOSTIC, 16, -9.307739466704e-01, 1.220325763687e-03, 2.5893e+00, 8.8824e-02, 1DIAGNOSTIC, 17, -9.323685920384e-01, 1.023875065275e-03, 2.6785e+00, 8.9253e-02, 1DIAGNOSTIC, 18, -9.342723775921e-01, 8.767762495069e-04, 2.7674e+00, 8.8886e-02, 1DIAGNOSTIC, 19, -9.357731531851e-01, 7.521603040382e-04, 2.8562e+00, 8.8766e-02, 1DIAGNOSTIC, 20, -9.373079996875e-01, 6.488216345590e-04, 2.9446e+00, 8.8395e-02, 1DIAGNOSTIC, 21, -9.388663583570e-01, 5.628511590796e-04, 3.0334e+00, 8.8794e-02, 1DIAGNOSTIC, 22, -9.401716375647e-01, 4.927576658441e-04, 3.1218e+00, 8.8469e-02, 1DIAGNOSTIC, 23, -9.406972398859e-01, 4.316026594929e-04, 3.2116e+00, 8.9768e-02, 1DIAGNOSTIC, 24, -9.420621573318e-01, 3.865059117286e-04, 3.3006e+00, 8.9041e-02, 1DIAGNOSTIC, 25, -9.430056793233e-01, 3.436179894610e-04, 3.3903e+00, 8.9694e-02, 1DIAGNOSTIC, 26, -9.435815257231e-01, 3.005396370210e-04, 3.4787e+00, 8.8332e-02, 1DIAGNOSTIC, 27, -9.444849835084e-01, 2.610031724841e-04, 3.5681e+00, 8.9417e-02, 1DIAGNOSTIC, 28, -9.456511814715e-01, 2.336208163710e-04, 3.6563e+00, 8.8242e-02, 1DIAGNOSTIC, 29, -9.461071169316e-01, 2.066466103068e-04, 3.7464e+00, 9.0064e-02, 1DIAGNOSTIC, 30, -9.471078179579e-01, 1.879480088354e-04, 3.8353e+00, 8.8925e-02, 1DIAGNOSTIC, 31, -9.475274041852e-01, 1.722305346724e-04, 3.9242e+00, 8.8878e-02, 1DIAGNOSTIC, 32, -9.481944799794e-01, 1.603583198232e-04, 4.0133e+00, 8.9159e-02, 1DIAGNOSTIC, 33, -9.483014930919e-01, 1.396543524742e-04, 4.1021e+00, 8.8785e-02, 1DIAGNOSTIC, 34, -9.488715095851e-01, 1.244916197602e-04, 4.1923e+00, 9.0209e-02, 1DIAGNOSTIC, 35, -9.488152363385e-01, 1.061975068052e-04, 4.2801e+00, 8.7765e-02, 1DIAGNOSTIC, 36, -9.493520066230e-01, 8.838325834074e-05, 4.3684e+00, 8.8263e-02, 1DIAGNOSTIC, 37, -9.496332297608e-01, 7.281519564712e-05, 4.4576e+00, 8.9211e-02, 1DIAGNOSTIC, 38, -9.500372381286e-01, 6.390544638402e-05, 4.5467e+00, 8.9119e-02, 1DIAGNOSTIC, 39, -9.501841079103e-01, 5.402991282614e-05, 4.6362e+00, 8.9505e-02, 1DIAGNOSTIC, 40, -9.506805651258e-01, 5.106743478905e-05, 4.7240e+00, 8.7836e-02, 1DIAGNOSTIC, 41, -9.507227082491e-01, 4.673058640606e-05, 4.8126e+00, 8.8582e-02, 1DIAGNOSTIC, 42, -9.512627167393e-01, 4.703713055706e-05, 4.9008e+00, 8.8222e-02, 1DIAGNOSTIC, 43, -9.513124482994e-01, 4.386009542440e-05, 4.9896e+00, 8.8773e-02, 1DIAGNOSTIC, 44, -9.516993586471e-01, 4.345383591545e-05, 5.0782e+00, 8.8538e-02, 1DIAGNOSTIC, 45, -9.518973153376e-01, 3.983580122167e-05, 5.1667e+00, 8.8567e-02, 1DIAGNOSTIC, 46, -9.525859517435e-01, 4.074156407684e-05, 5.2566e+00, 8.9906e-02, 1DIAGNOSTIC, 47, -9.522387527851e-01, 3.720477565631e-05, 5.3457e+00, 8.9069e-02, 1DIAGNOSTIC, 48, -9.526210729996e-01, 3.544908154243e-05, 5.4342e+00, 8.8479e-02, 1DIAGNOSTIC, 49, -9.526136758066e-01, 3.120382437612e-05, 5.5236e+00, 8.9411e-02, 1DIAGNOSTIC, 50, -9.525212882494e-01, 2.665815878812e-05, 5.6126e+00, 8.9012e-02, 1DIAGNOSTIC, 51, -9.525256622609e-01, 2.001492966890e-05, 5.7277e+00, 1.1511e-01, 1DIAGNOSTIC, 52, -9.526749238429e-01, 1.585471649186e-05, 5.8165e+00, 8.8773e-02, 1DIAGNOSTIC, 53, -9.529210801876e-01, 1.204662613739e-05, 5.9057e+00, 8.9188e-02, 1DIAGNOSTIC, 54, -9.525802286766e-01, 7.493436306422e-06, 5.9952e+00, 8.9492e-02, 1DIAGNOSTIC, 55, -9.526256918808e-01, 3.789271362447e-06, 6.0862e+00, 9.1059e-02, 1DIAGNOSTIC, 56, -9.528582799845e-01, 4.987834143263e-06, 6.1755e+00, 8.9225e-02, 1DIAGNOSTIC, 57, -9.526894983150e-01, 2.818786095628e-06, 6.2636e+00, 8.8191e-02, 1DIAGNOSTIC, 58, -9.525488383335e-01, 1.798340018982e-06, 6.3545e+00, 9.0823e-02, 1DIAGNOSTIC, 59, -9.527500970863e-01, 1.772990208839e-06, 6.4482e+00, 9.3715e-02, 1DIAGNOSTIC, 60, -9.529350233228e-01, 2.074808315815e-06, 6.5393e+00, 9.1159e-02, 1DIAGNOSTIC, 61, -9.527073386891e-01, 1.029738627221e-06, 6.6284e+00, 8.9111e-02, 1DIAGNOSTIC, 62, -9.529034445709e-01, 1.682760987151e-06, 6.7259e+00, 9.7425e-02, 1DIAGNOSTIC, 63, -9.529258967365e-01, 3.550654766746e-06, 6.8175e+00, 9.1619e-02, 1DIAGNOSTIC, 64, -9.526327108042e-01, 2.027632079918e-06, 6.9078e+00, 9.0282e-02, 1DIAGNOSTIC, 65, -9.525585783590e-01, 2.617981470741e-07, 6.9978e+00, 9.0061e-02, XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -8.691139211963e-01, 1.797693134862e+308, 8.8035e+00, 1.8056e+00, 1DIAGNOSTIC, 2, -8.763469540773e-01, 1.797693134862e+308, 9.3212e+00, 5.1776e-01, 1DIAGNOSTIC, 3, -8.820872492222e-01, 1.797693134862e+308, 9.8406e+00, 5.1933e-01, 1DIAGNOSTIC, 4, -8.872318127945e-01, 1.797693134862e+308, 1.0363e+01, 5.2289e-01, 1DIAGNOSTIC, 5, -8.920399474731e-01, 1.797693134862e+308, 1.0958e+01, 5.9469e-01, 1DIAGNOSTIC, 6, -8.962214583343e-01, 1.797693134862e+308, 1.1495e+01, 5.3710e-01, 1DIAGNOSTIC, 7, -8.997828512724e-01, 1.797693134862e+308, 1.2038e+01, 5.4317e-01, 1DIAGNOSTIC, 8, -9.030830868676e-01, 1.797693134862e+308, 1.2573e+01, 5.3481e-01, 1DIAGNOSTIC, 9, -9.058634538070e-01, 1.797693134862e+308, 1.3111e+01, 5.3735e-01, 1DIAGNOSTIC, 10, -9.085016678123e-01, 2.758064307573e-03, 1.3675e+01, 5.6490e-01, 1DIAGNOSTIC, 11, -9.108718050688e-01, 2.212311709517e-03, 1.4206e+01, 5.3013e-01, 1DIAGNOSTIC, 12, -9.126660843438e-01, 1.797141897160e-03, 1.4755e+01, 5.4901e-01, 1DIAGNOSTIC, 13, -9.147841755073e-01, 1.474571873469e-03, 1.5288e+01, 5.3378e-01, 1DIAGNOSTIC, 14, -9.163364441228e-01, 1.214411477149e-03, 1.5824e+01, 5.3586e-01, 1DIAGNOSTIC, 15, -9.178338536723e-01, 1.010188396792e-03, 1.6409e+01, 5.8482e-01, 1DIAGNOSTIC, 16, -9.191499400536e-01, 8.467588210834e-04, 1.6943e+01, 5.3391e-01, 1DIAGNOSTIC, 17, -9.205940481825e-01, 7.168720153272e-04, 1.7479e+01, 5.3626e-01, 1DIAGNOSTIC, 18, -9.218636399256e-01, 6.145620683546e-04, 1.8015e+01, 5.3542e-01, 1DIAGNOSTIC, 19, -9.230920623644e-01, 5.318960419938e-04, 1.8550e+01, 5.3523e-01, 1DIAGNOSTIC, 20, -9.243803208156e-01, 4.693709394600e-04, 1.9114e+01, 5.6378e-01, 1DIAGNOSTIC, 21, -9.254782157894e-01, 4.206450253627e-04, 1.9699e+01, 5.8492e-01, 1DIAGNOSTIC, 22, -9.264828834247e-01, 3.765180377929e-04, 2.0245e+01, 5.4636e-01, 1DIAGNOSTIC, 23, -9.275290500847e-01, 3.438803954668e-04, 2.0892e+01, 6.4672e-01, 1DIAGNOSTIC, 24, -9.284723620054e-01, 3.140125557901e-04, 2.1462e+01, 5.7061e-01, 1DIAGNOSTIC, 25, -9.294190660070e-01, 2.874354836312e-04, 2.2104e+01, 6.4179e-01, 1DIAGNOSTIC, 26, -9.302157438330e-01, 2.610340427282e-04, 2.2638e+01, 5.3350e-01, 1DIAGNOSTIC, 27, -9.309656605494e-01, 2.372705305919e-04, 2.3199e+01, 5.6107e-01, 1DIAGNOSTIC, 28, -9.316679609772e-01, 2.146773771275e-04, 2.3733e+01, 5.3453e-01, 1DIAGNOSTIC, 29, -9.323206142258e-01, 1.934127050317e-04, 2.4286e+01, 5.5268e-01, 1DIAGNOSTIC, 30, -9.330587121793e-01, 1.762057484625e-04, 2.4867e+01, 5.8104e-01, 1DIAGNOSTIC, 31, -9.336135308261e-01, 1.599181623806e-04, 2.5442e+01, 5.7518e-01, 1DIAGNOSTIC, 32, -9.341125639713e-01, 1.440534270066e-04, 2.6006e+01, 5.6402e-01, 1DIAGNOSTIC, 33, -9.346469402192e-01, 1.303395324095e-04, 2.6589e+01, 5.8269e-01, 1DIAGNOSTIC, 34, -9.352369480730e-01, 1.189697326132e-04, 2.7175e+01, 5.8615e-01, 1DIAGNOSTIC, 35, -9.356090291846e-01, 1.085500389939e-04, 2.7772e+01, 5.9673e-01, 1DIAGNOSTIC, 36, -9.362744609860e-01, 1.009832887251e-04, 2.8370e+01, 5.9795e-01, 1DIAGNOSTIC, 37, -9.367057010724e-01, 9.405507201313e-05, 2.9087e+01, 7.1705e-01, 1DIAGNOSTIC, 38, -9.372197586666e-01, 8.844024462605e-05, 2.9654e+01, 5.6692e-01, 1DIAGNOSTIC, 39, -9.377005661975e-01, 8.362301320291e-05, 3.0257e+01, 6.0346e-01, 1DIAGNOSTIC, 40, -9.381107062121e-01, 7.993918714180e-05, 3.0844e+01, 5.8740e-01, 1DIAGNOSTIC, 41, -9.385057893553e-01, 7.597679057547e-05, 3.1387e+01, 5.4230e-01, 1DIAGNOSTIC, 42, -9.389837810144e-01, 7.212673578581e-05, 3.2006e+01, 6.1973e-01, 1DIAGNOSTIC, 43, -9.393849343515e-01, 6.824929012561e-05, 3.2572e+01, 5.6548e-01, 1DIAGNOSTIC, 44, -9.398850082103e-01, 6.570360299208e-05, 3.3189e+01, 6.1659e-01, 1DIAGNOSTIC, 45, -9.403446426543e-01, 6.264506762452e-05, 3.3762e+01, 5.7377e-01, 1DIAGNOSTIC, 46, -9.408546913092e-01, 6.161923355978e-05, 3.4372e+01, 6.1011e-01, 1DIAGNOSTIC, 47, -9.413200279651e-01, 6.059510506381e-05, 3.4970e+01, 5.9711e-01, 1DIAGNOSTIC, 48, -9.419002397506e-01, 6.082218098327e-05, 3.5584e+01, 6.1472e-01, 1DIAGNOSTIC, 49, -9.422995269185e-01, 6.072481938549e-05, 3.6188e+01, 6.0340e-01, 1DIAGNOSTIC, 50, -9.427373601151e-01, 6.005070857681e-05, 3.6732e+01, 5.4413e-01, 1DIAGNOSTIC, 51, -9.430098945605e-01, 5.767045657930e-05, 3.7284e+01, 5.5266e-01, 1DIAGNOSTIC, 52, -9.434486965692e-01, 5.530142694566e-05, 3.7831e+01, 5.4616e-01, 1DIAGNOSTIC, 53, -9.438205355421e-01, 5.217127961950e-05, 3.8383e+01, 5.5282e-01, 1DIAGNOSTIC, 54, -9.444393573942e-01, 5.051670798463e-05, 3.8923e+01, 5.3981e-01, 1DIAGNOSTIC, 55, -9.447691653949e-01, 4.845411134621e-05, 3.9475e+01, 5.5152e-01, 1DIAGNOSTIC, 56, -9.452467478656e-01, 4.726566975616e-05, 4.0040e+01, 5.6492e-01, 1DIAGNOSTIC, 57, -9.454959494584e-01, 4.540692797805e-05, 4.0592e+01, 5.5207e-01, 1DIAGNOSTIC, 58, -9.458307625053e-01, 4.410362653879e-05, 4.1255e+01, 6.6360e-01, 1DIAGNOSTIC, 59, -9.460991677709e-01, 4.205836186207e-05, 4.1915e+01, 6.6003e-01, 1DIAGNOSTIC, 60, -9.463488106737e-01, 3.957559455760e-05, 4.2477e+01, 5.6194e-01, 1DIAGNOSTIC, 61, -9.465249753117e-01, 3.564264226308e-05, 4.3037e+01, 5.5958e-01, 1DIAGNOSTIC, 62, -9.467903348943e-01, 3.192786735682e-05, 4.3792e+01, 7.5546e-01, 1DIAGNOSTIC, 63, -9.469413641649e-01, 2.778082134461e-05, 4.4415e+01, 6.2248e-01, 1DIAGNOSTIC, 64, -9.471889981237e-01, 2.526511497922e-05, 4.5065e+01, 6.5000e-01, 1DIAGNOSTIC, 65, -9.472379639742e-01, 2.217179841350e-05, 4.5622e+01, 5.5681e-01, 1DIAGNOSTIC, 66, -9.476561799020e-01, 2.124230185891e-05, 4.6158e+01, 5.3685e-01, 1DIAGNOSTIC, 67, -9.477247421477e-01, 1.972322014232e-05, 4.6711e+01, 5.5201e-01, 1DIAGNOSTIC, 68, -9.481346793901e-01, 1.973469861477e-05, 4.7258e+01, 5.4708e-01, 1DIAGNOSTIC, 69, -9.480767400014e-01, 1.877959967976e-05, 4.7799e+01, 5.4187e-01, 1DIAGNOSTIC, 70, -9.484366217504e-01, 1.877070106655e-05, 4.8349e+01, 5.4947e-01, XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -8.289217521509e-01, 1.797693134862e+308, 5.3987e+01, 5.6380e+00, 1DIAGNOSTIC, 2, -8.315988390917e-01, 1.797693134862e+308, 5.7677e+01, 3.6904e+00, 1DIAGNOSTIC, 3, -8.343739901141e-01, 1.797693134862e+308, 6.1344e+01, 3.6666e+00, 1DIAGNOSTIC, 4, -8.373346416118e-01, 1.797693134862e+308, 6.4889e+01, 3.5448e+00, 1DIAGNOSTIC, 5, -8.398252111407e-01, 1.797693134862e+308, 6.8732e+01, 3.8433e+00, 1DIAGNOSTIC, 6, -8.421174823119e-01, 1.797693134862e+308, 7.2245e+01, 3.5130e+00, 1DIAGNOSTIC, 7, -8.441799998254e-01, 1.797693134862e+308, 7.5726e+01, 3.4807e+00, 1DIAGNOSTIC, 8, -8.460988025303e-01, 1.797693134862e+308, 7.9354e+01, 3.6285e+00, 1DIAGNOSTIC, 9, -8.479202019309e-01, 1.797693134862e+308, 8.3181e+01, 3.8262e+00, 1DIAGNOSTIC, 10, -8.495898649348e-01, 1.584007056080e-03, 8.6815e+01, 3.6346e+00, 1DIAGNOSTIC, 11, -8.509409787725e-01, 1.334014102470e-03, 9.0423e+01, 3.6081e+00, 1DIAGNOSTIC, 12, -8.521789544568e-01, 1.115679988074e-03, 9.4131e+01, 3.7079e+00, 1DIAGNOSTIC, 13, -8.533736699485e-01, 9.323106084492e-04, 9.7799e+01, 3.6675e+00, 1DIAGNOSTIC, 14, -8.545455998225e-01, 7.891709091944e-04, 1.0153e+02, 3.7270e+00, 1DIAGNOSTIC, 15, -8.555922129968e-01, 6.717807634951e-04, 1.0509e+02, 3.5641e+00, 1DIAGNOSTIC, 16, -8.564686480016e-01, 5.736748128824e-04, 1.0882e+02, 3.7315e+00, 1DIAGNOSTIC, 17, -8.574361673532e-01, 4.939267727576e-04, 1.1251e+02, 3.6935e+00, 1DIAGNOSTIC, 18, -8.581706862856e-01, 4.264590619071e-04, 1.1621e+02, 3.6996e+00, 1DIAGNOSTIC, 19, -8.588905711130e-01, 3.710942793651e-04, 1.1996e+02, 3.7461e+00, 1DIAGNOSTIC, 20, -8.595497043386e-01, 3.256203122637e-04, 1.2403e+02, 4.0746e+00, 1DIAGNOSTIC, 21, -8.602175551681e-01, 2.862012306869e-04, 1.2781e+02, 3.7742e+00, 1DIAGNOSTIC, 22, -8.608205792217e-01, 2.514743157568e-04, 1.3151e+02, 3.6964e+00, 1DIAGNOSTIC, 23, -8.614111916798e-01, 2.220413708455e-04, 1.3520e+02, 3.6957e+00, 1DIAGNOSTIC, 24, -8.620399730696e-01, 1.992243384349e-04, 1.3904e+02, 3.8347e+00, 1DIAGNOSTIC, 25, -8.625614980951e-01, 1.803868942589e-04, 1.4293e+02, 3.8953e+00, 1DIAGNOSTIC, 26, -8.630743272535e-01, 1.637531769194e-04, 1.4674e+02, 3.8096e+00, 1DIAGNOSTIC, 27, -8.635494926029e-01, 1.507170583650e-04, 1.5047e+02, 3.7303e+00, 1DIAGNOSTIC, 28, -8.640054587207e-01, 1.385259038013e-04, 1.5418e+02, 3.7106e+00, 1DIAGNOSTIC, 29, -8.644663584930e-01, 1.276221741803e-04, 1.5786e+02, 3.6742e+00, 1DIAGNOSTIC, 30, -8.648846104817e-01, 1.172945714549e-04, 1.6151e+02, 3.6536e+00, 1DIAGNOSTIC, 31, -8.652602212335e-01, 1.077346751683e-04, 1.6517e+02, 3.6654e+00, 1DIAGNOSTIC, 32, -8.656596885582e-01, 9.899185081678e-05, 1.6897e+02, 3.7961e+00, 1DIAGNOSTIC, 33, -8.660404744051e-01, 9.114288136188e-05, 1.7265e+02, 3.6800e+00, 1DIAGNOSTIC, 34, -8.664178145111e-01, 8.492984497877e-05, 1.7652e+02, 3.8674e+00, 1DIAGNOSTIC, 35, -8.667722568341e-01, 7.931214245819e-05, 1.8026e+02, 3.7407e+00, 1DIAGNOSTIC, 36, -8.671284418700e-01, 7.449434081307e-05, 1.8418e+02, 3.9165e+00, 1DIAGNOSTIC, 37, -8.674599340985e-01, 7.009108597642e-05, 1.8839e+02, 4.2174e+00, 1DIAGNOSTIC, 38, -8.677729592816e-01, 6.595841489232e-05, 1.9229e+02, 3.8986e+00, 1DIAGNOSTIC, 39, -8.680941077239e-01, 6.241541821060e-05, 1.9612e+02, 3.8331e+00, 1DIAGNOSTIC, 40, -8.683383859317e-01, 5.860635231729e-05, 2.0004e+02, 3.9166e+00, 1DIAGNOSTIC, 41, -8.686403034685e-01, 5.489428391503e-05, 2.0406e+02, 4.0207e+00, 1DIAGNOSTIC, 42, -8.689577261435e-01, 5.178453582952e-05, 2.0798e+02, 3.9213e+00, 1DIAGNOSTIC, 43, -8.692010438566e-01, 4.868378251220e-05, 2.1185e+02, 3.8666e+00, 1DIAGNOSTIC, 44, -8.694680325944e-01, 4.595160923880e-05, 2.1583e+02, 3.9773e+00, 1DIAGNOSTIC, 45, -8.697501370334e-01, 4.365308183125e-05, 2.1996e+02, 4.1320e+00, 1DIAGNOSTIC, 46, -8.700033657696e-01, 4.167446233868e-05, 2.2405e+02, 4.0875e+00, 1DIAGNOSTIC, 47, -8.702399530294e-01, 3.980520937913e-05, 2.2779e+02, 3.7479e+00, 1DIAGNOSTIC, 48, -8.704720295271e-01, 3.798155799974e-05, 2.3149e+02, 3.6910e+00, 1DIAGNOSTIC, 49, -8.707147196526e-01, 3.643784131115e-05, 2.3530e+02, 3.8158e+00, 1DIAGNOSTIC, 50, -8.709319746324e-01, 3.452939200623e-05, 2.3917e+02, 3.8674e+00, Elapsed time (stage 2): 244

Total elapsed time: 309.7

Apply linear transform to T1 antsApplyTransforms -d 3 -i /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.hh0vCEw4zT/ANTS0GenericAffine.mat -o /tmp/tmp.hh0vCEw4zT/T1_norm_lin_atlas_2_5.nii.gz

Apply linear transform to distorted b0 antsApplyTransforms -d 3 -i /INPUTS/b0.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.hh0vCEw4zT/ANTS0GenericAffine.mat -t /tmp/tmp.hh0vCEw4zT/epi_reg_d_ANTS.txt -o /tmp/tmp.hh0vCEw4zT/b0_d_lin_atlas_2_5.nii.gz

Apply nonlinear transform to T1 antsApplyTransforms -d 3 -i /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.hh0vCEw4zT/ANTS1Warp.nii.gz -t /tmp/tmp.hh0vCEw4zT/ANTS0GenericAffine.mat -o /tmp/tmp.hh0vCEw4zT/T1_norm_nonlin_atlas_2_5.nii.gz

Apply nonlinear transform to distorted b0 antsApplyTransforms -d 3 -i /INPUTS/b0.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.hh0vCEw4zT/ANTS1Warp.nii.gz -t /tmp/tmp.hh0vCEw4zT/ANTS0GenericAffine.mat -t /tmp/tmp.hh0vCEw4zT/epi_reg_d_ANTS.txt -o /tmp/tmp.hh0vCEw4zT/b0_d_nonlin_atlas_2_5.nii.gz

Copying results to results path...

Removing job directory... Performing inference on FOLD: 1 /extra/pipeline.sh: line 27: 1699 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_"$i".nii.gz /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch.pth Performing inference on FOLD: 2 /extra/pipeline.sh: line 27: 1732 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_"$i".nii.gz /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch.pth Performing inference on FOLD: 3 Performing inference on FOLD: 4 /extra/pipeline.sh: line 27: 1765 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_"$i".nii.gz /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch.pth Performing inference on FOLD: 5 /extra/pipeline.sh: line 27: 1798 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_"$i".nii.gz /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch.pth Taking ensemble average /extra/pipeline.sh: line 27: 1831 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_"$i".nii.gz /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch.pth Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_ terminate called after throwing an instance of 'std::runtime_error' what(): No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_* /extra/pipeline.sh: line 34: 1864 Aborted (core dumped) fslmerge -t /OUTPUTS/b0_u_lin_atlas_2_5_merged.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_*.nii.gz Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_merged terminate called after throwing an instance of 'std::runtime_error' what(): No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_merged /extra/pipeline.sh: line 35: 1865 Aborted (core dumped) fslmaths /OUTPUTS/b0_u_lin_atlas_2_5_merged.nii.gz -Tmean /OUTPUTS/b0_u_lin_atlas_2_5.nii.gz Applying inverse xform to undistorted b0 file /OUTPUTS/b0_u_lin_atlas_2_5.nii.gz does not exist . terminate called after throwing an instance of 'itk::ExceptionObject' what(): /home/local/VANDERBILT/blaberj/ANTS_13_FEB_2019/bin/ants/ITKv5/Modules/Core/Common/src/itkProcessObject.cxx:1412: itk::ERROR: ResampleImageFilter(0x2927ff0): Input Primary is required but not set. Applying slight smoothing to distorted b0 /extra/pipeline.sh: line 39: 1866 Aborted (core dumped) antsApplyTransforms -d 3 -i /OUTPUTS/b0_u_lin_atlas_2_5.nii.gz -r /INPUTS/b0.nii.gz -n BSpline -t [/OUTPUTS/epi_reg_d_ANTS.txt,1] -t [/OUTPUTS/ANTS0GenericAffine.mat,1] -o /OUTPUTS/b0_u.nii.gz Running topup Image Exception : #63 :: No image files match: /OUTPUTS/b0_u terminate called after throwing an instance of 'std::runtime_error' what(): No image files match: /OUTPUTS/b0_u /extra/pipeline.sh: line 47: 1872 Aborted (core dumped) fslmerge -t /OUTPUTS/b0_all.nii.gz /OUTPUTS/b0_d_smooth.nii.gz /OUTPUTS/b0_u.nii.gz Image Exception : #63 :: No image files match: /OUTPUTS/b0_all FINISHED!!! Image Exception : #22 :: Failed to read volume /OUTPUTS/b0_all.nii.gz Error : No image files match: /OUTPUTS/b0_all

Part of FSL (ID: 6.0.1) topup

Usage: topup --imain=<some 4D image> --datain= --config= --out=my_topup_results

Compulsory arguments (You MUST set one or more of): --imain name of 4D file with images --datain name of text file with PE directions/times

Optional arguments (You may optionally specify one or more of): --out base-name of output files (spline coefficients (Hz) and movement parameters) --fout name of image file with field (Hz) --iout name of 4D image file with unwarped images --logout Name of log-file --warpres (approximate) resolution (in mm) of warp basis for the different sub-sampling levels, default 10 --subsamp sub-sampling scheme, default 1 --fwhm FWHM (in mm) of gaussian smoothing kernel, default 8 --config Name of config file specifying command line arguments --miter Max # of non-linear iterations, default 5 --lambda Weight of regularisation, default depending on --ssqlambda and --regmod switches. See user documetation. --ssqlambda If set (=1), lambda is weighted by current ssq, default 1 --regmod Model for regularisation of warp-field [membrane_energy bending_energy], default bending_energy --estmov Estimate movements if set, default 1 (true) --minmet Minimisation method 0=Levenberg-Marquardt, 1=Scaled Conjugate Gradient, default 0 (LM) --splineorder Order of spline, 2->Qadratic spline, 3->Cubic spline. Default=3 --numprec Precision for representing Hessian, double or float. Default double --interp Image interpolation model, linear or spline. Default spline --scale If set (=1), the images are individually scaled to a common mean, default 0 (false) --regrid If set (=1), the calculations are done in a different grid, default 1 (true) -h,--help display help info -v,--verbose Print diagonostic information while running -h,--help display help info

Failed to read volume /OUTPUTS/b0_all.nii.gz Error : No image files match: /OUTPUTS/b0_all

Sep 05 '21 14:09 Meryam1985

When i tested another image with sub_acq-AP_dwi.val : 0 0 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 i get this error

base) besma@besma-ThinkCentre-M720t:/media/besma/docc/ses-001use_sb0/anat$ sudo docker run --rm \

-v /media/besma/docc/ses-001use_sb0/anat/:/INPUTS/
-v /media/besma/docc/ses-001use_sb0/anat/out:/OUTPUTS/
-v /media/besma/docc/freesurfer-linux-centos6_x86_64-7.1.1/freesurfer/license.txt:/extra/freesurfer/license.txt
--user $(id -u):$(id -g)
justinblaber/synb0_25iso [sudo] password for besma:

INPUTS: Distorted b0 path: /INPUTS/b0.nii.gz T1 path: /INPUTS/T1.nii.gz T1 atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz T1 2.5 iso atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz Results path: /OUTPUTS

Job directory path: /tmp/tmp.2rM5DDNdfq

Making results directory...

Normalizing T1 normalize_T1.sh /INPUTS/T1.nii.gz /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz

INPUTS: T1 path: /INPUTS/T1.nii.gz T1 N3 path: /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz T1 normalized path: /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz

Job directory path: /tmp/tmp.fF9M9wgwDa

mri_convert /tmp/tmp.fF9M9wgwDa/T1.nii.gz /tmp/tmp.fF9M9wgwDa/T1.mgz mri_convert.bin /tmp/tmp.fF9M9wgwDa/T1.nii.gz /tmp/tmp.fF9M9wgwDa/T1.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /tmp/tmp.fF9M9wgwDa/T1.nii.gz... TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.998395, -0.0241115, 0.0512432) j_ras = (0.0242415, 0.999704, -0.00191732) k_ras = (-0.0511818, 0.00315645, 0.998684) writing to /tmp/tmp.fF9M9wgwDa/T1.mgz...

mri_nu_correct.mni --i /tmp/tmp.fF9M9wgwDa/T1.mgz --o /tmp/tmp.fF9M9wgwDa/T1_N3.mgz --n 2 / /extra/freesurfer/bin/mri_nu_correct.mni --i /tmp/tmp.fF9M9wgwDa/T1.mgz --o /tmp/tmp.fF9M9wgwDa/T1_N3.mgz --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux a13218ba6684 5.11.0-27-generic #29~20.04.1-Ubuntu SMP Wed Aug 11 15:58:17 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Fri Sep 3 15:51:11 UTC 2021 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21 / mri_convert /tmp/tmp.fF9M9wgwDa/T1.mgz /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu0.mnc -odt float mri_convert.bin /tmp/tmp.fF9M9wgwDa/T1.mgz /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /tmp/tmp.fF9M9wgwDa/T1.mgz... TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.998395, -0.0241115, 0.0512432) j_ras = (0.0242415, 0.999704, -0.00191732) k_ras = (-0.0511818, 0.00315645, 0.998684) writing to /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu0.mnc...

Iteration 1 Fri Sep 3 15:51:13 UTC 2021 nu_correct -clobber /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu0.mnc /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu1.mnc -tmpdir /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/0/ [@a13218ba6684:/] [2021-09-03 15:51:13] running: /extra/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/0/ /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu0.mnc /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu1.imp

Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Number of iterations: 24 CV of field change: 0.000955262

Iteration 2 Fri Sep 3 15:51:41 UTC 2021 nu_correct -clobber /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu1.mnc /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc -tmpdir /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/1/ [@a13218ba6684:/] [2021-09-03 15:51:41] running: /extra/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/1/ /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu1.mnc /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.imp

Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Processing:.....................................................Done Number of iterations: 18 CV of field change: 0.000949143

mri_binarize --i /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc --min -1 --o /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz

$Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd / cmdline mri_binarize.bin --i /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc --min -1 --o /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz sysname Linux hostname a13218ba6684 machine x86_64 user UNKNOWN

input /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 12779520 values in range Counting number of voxels in first frame Found 12779520 voxels in final mask Count: 12779520 12779520.000000 12779520 100.000000 mri_binarize done mri_segstats --id 1 --seg /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz --i /tmp/tmp.fF9M9wgwDa/T1.mgz --sum /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/sum.junk --avgwf /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/input.mean.dat

$Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz --i /tmp/tmp.fF9M9wgwDa/T1.mgz --sum /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/sum.junk --avgwf /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/input.mean.dat sysname Linux hostname a13218ba6684 machine x86_64 user UNKNOWN UseRobust 0 Loading /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz Loading /tmp/tmp.fF9M9wgwDa/T1.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation

Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/input.mean.dat mri_segstats done mri_segstats --id 1 --seg /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz --i /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc --sum /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/sum.junk --avgwf /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/output.mean.dat

$Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz --i /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc --sum /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/sum.junk --avgwf /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/output.mean.dat sysname Linux hostname a13218ba6684 machine x86_64 user UNKNOWN UseRobust 0 Loading /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz Loading /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation

Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/output.mean.dat mri_segstats done mris_calc -o /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc mul 1.07153025288276934311 Saving result to '/tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc' (type = MINC ) [ ok ] mri_convert /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc /tmp/tmp.fF9M9wgwDa/T1_N3.mgz --like /tmp/tmp.fF9M9wgwDa/T1.mgz --conform mri_convert.bin /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc /tmp/tmp.fF9M9wgwDa/T1_N3.mgz --like /tmp/tmp.fF9M9wgwDa/T1.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.998395, -0.0241115, 0.0512432) j_ras = (0.0242415, 0.999704, -0.00191732) k_ras = (-0.0511818, 0.00315645, 0.998684) INFO: transform src into the like-volume: /tmp/tmp.fF9M9wgwDa/T1.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to /tmp/tmp.fF9M9wgwDa/T1_N3.mgz...

Fri Sep 3 15:52:24 UTC 2021 mri_nu_correct.mni done

mri_convert /tmp/tmp.fF9M9wgwDa/T1_N3.mgz /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz mri_convert.bin /tmp/tmp.fF9M9wgwDa/T1_N3.mgz /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /tmp/tmp.fF9M9wgwDa/T1_N3.mgz... TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.998395, -0.0241115, 0.0512432) j_ras = (0.0242415, 0.999704, -0.00191732) k_ras = (-0.0511818, 0.00315645, 0.998684) writing to /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz...

mri_normalize -g 1 -mprage /tmp/tmp.fF9M9wgwDa/T1_N3.mgz /tmp/tmp.fF9M9wgwDa/T1_norm.mgz using max gradient = 1.000 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading from /tmp/tmp.fF9M9wgwDa/T1_N3.mgz... normalizing image... processing without aseg, no1d=0 MRInormInit(): no Talairach xform detected - using skull bounding box to determine origin MRInormalize(): MRIsplineNormalize(): npeaks = 1 ERROR: number of peaks must be > 1 for spline 1d normalization failed - trying no1d... building Voronoi diagram... performing soap bubble smoothing, sigma = 8...

Iterating 2 times

3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 90 gm peak at 72 (72), valley at 55 (55) csf peak at 38, setting threshold to 60 building Voronoi diagram... performing soap bubble smoothing, sigma = 8...

3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 73 (73), valley at 41 (41) csf peak at 37, setting threshold to 61 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- ***** WARNING - forcing scaling of values to prevent cropping of input [ 0, 263] * DISABLING forcing and not doing scaling ****** writing output to /tmp/tmp.fF9M9wgwDa/T1_norm.mgz 3D bias adjustment took 1 minutes and 15 seconds.

mri_convert /tmp/tmp.fF9M9wgwDa/T1_norm.mgz /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz mri_convert.bin /tmp/tmp.fF9M9wgwDa/T1_norm.mgz /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /tmp/tmp.fF9M9wgwDa/T1_norm.mgz... TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.998395, -0.0241115, 0.0512432) j_ras = (0.0242415, 0.999704, -0.00191732) k_ras = (-0.0511818, 0.00315645, 0.998684) writing to /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz...

Removing job directory...

Skull stripping T1 bet /INPUTS/T1.nii.gz /tmp/tmp.2rM5DDNdfq/T1_mask.nii.gz -R

epi_reg distorted b0 to T1 epi_reg --epi=/INPUTS/b0.nii.gz --t1=/INPUTS/T1.nii.gz --t1brain=/tmp/tmp.2rM5DDNdfq/T1_mask.nii.gz --out=/tmp/tmp.2rM5DDNdfq/epi_reg_d Running FAST segmentation FLIRT pre-alignment Running BBR Image Exception : #75 :: 3D only method called by higher-dimensional volume. 3D only method called by higher-dimensional volume. Could not open matrix file /tmp/tmp.2rM5DDNdfq/epi_reg_d.mat /extra/fsl/bin/epi_reg: line 399: 1206 Segmentation fault (core dumped) $FSLDIR/bin/applywarp -i ${vepi} -r ${vrefhead} -o ${vout} --premat=${vout}.mat --interp=spline

converting FSL transform to ANTS transform c3d_affine_tool -ref /INPUTS/T1.nii.gz -src /INPUTS/b0.nii.gz /tmp/tmp.2rM5DDNdfq/epi_reg_d.mat -fsl2ras -oitk /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt terminate called after throwing an instance of 'char const*'

ANTS syn registration antsRegistrationSyNQuick.sh -d 3 -f /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz -m /INPUTS/T1.nii.gz -o /tmp/tmp.2rM5DDNdfq/ANTS /extra/prepare_input.sh: line 60: 1401 Aborted (core dumped) c3d_affine_tool -ref /INPUTS/T1.nii.gz -src /INPUTS/b0.nii.gz /tmp/tmp.2rM5DDNdfq/epi_reg_d.mat -fsl2ras -oitk /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt

Mapping parameters

ANTSPATH is /extra/ANTS/bin/ants/bin/

Dimensionality: 3 Output name prefix: /tmp/tmp.2rM5DDNdfq/ANTS Fixed images: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz Moving images: /INPUTS/T1.nii.gz Mask images:
Initial transforms:
Number of threads: 1 Spline distance: 26 Transform type: s MI histogram bins: 32 Precision: d Use histogram matching 0

antsRegistration call:

/extra/ANTS/bin/ants/bin//antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [/tmp/tmp.2rM5DDNdfq/ANTS,/tmp/tmp.2rM5DDNdfq/ANTSWarped.nii.gz,/tmp/tmp.2rM5DDNdfq/ANTSInverseWarped.nii.gz] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [0.005,0.995] --initial-moving-transform [/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1] --transform Rigid[0.1] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32,Regular,0.25] --convergence [1000x500x250x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[0.1] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32,Regular,0.25] --convergence [1000x500x250x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[0.1,3,0] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32] --convergence [100x70x50x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox

All_Command_lines_OK Using double precision for computations.

The composite transform comprises the following transforms (in order):

Center of mass alignment using fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz and moving image: /INPUTS/T1.nii.gz (type = Euler3DTransform) ============================================================================= number of levels = 4 number of levels = 4 number of levels = 4 fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz moving image: /INPUTS/T1.nii.gz fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz moving image: /INPUTS/T1.nii.gz fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz moving image: /INPUTS/T1.nii.gz Dimension = 3 Number of stages = 3 Use Histogram Matching false Winsorize image intensities true Lower quantile = 0.005 Upper quantile = 0.995 Stage 1 State Image metric = Mattes Fixed image = Image (0x2fbc5d0) RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 1626 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1429 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] Spacing: [1, 1, 1] Origin: [96, 132, -78] Direction: -1 0 0 0 -1 0 0 0 1

IndexToPointMatrix: -1 0 0 0 -1 0 0 0 1

PointToIndexMatrix: -1 0 0 0 -1 0 0 0 1

Inverse Direction: -1 0 0 0 -1 0 0 0 1

PixelContainer: ImportImageContainer (0x2fafc60) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 1426 Debug: Off Object Name: Observers: none Pointer: 0x7f33f5df7010 Container manages memory: true Size: 8530021 Capacity: 8530021

 Moving image = Image (0x2fe2cb0)

RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 1627 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1624 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [208, 240, 256] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [208, 240, 256] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [208, 240, 256] Spacing: [1, 1, 1] Origin: [93.0629, 93.8035, -175.398] Direction: -0.998395 -0.0242415 0.0511818 0.0241115 -0.999704 -0.00315645 0.0512432 -0.00191732 0.998684

IndexToPointMatrix: -0.998395 -0.0242415 0.0511818 0.0241115 -0.999704 -0.00315645 0.0512432 -0.00191732 0.998684

PointToIndexMatrix: -0.998395 0.0241115 0.0512432 -0.0242415 -0.999704 -0.00191732 0.0511818 -0.00315645 0.998684

Inverse Direction: -0.998395 0.0241115 0.0512432 -0.0242415 -0.999704 -0.00191732 0.0511818 -0.00315645 0.998684

PixelContainer: ImportImageContainer (0x2fbb560) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 1621 Debug: Off Object Name: Observers: none Pointer: 0x7f33efc76010 Container manages memory: true Size: 12779520 Capacity: 12779520

 Weighting = 1
 Sampling strategy = regular
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 0.25

Transform = Rigid Gradient step = 0.1 Update field sigma (voxel space) = 0 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Stage 2 State Image metric = Mattes Fixed image = Image (0x2fc0710) RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 2018 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1821 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] Spacing: [1, 1, 1] Origin: [96, 132, -78] Direction: -1 0 0 0 -1 0 0 0 1

IndexToPointMatrix: -1 0 0 0 -1 0 0 0 1

PointToIndexMatrix: -1 0 0 0 -1 0 0 0 1

Inverse Direction: -1 0 0 0 -1 0 0 0 1

PixelContainer: ImportImageContainer (0x2fbbca0) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 1818 Debug: Off Object Name: Observers: none Pointer: 0x7f33ebb61010 Container manages memory: true Size: 8530021 Capacity: 8530021

 Moving image = Image (0x2fd8af0)

RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 2019 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2016 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [208, 240, 256] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [208, 240, 256] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [208, 240, 256] Spacing: [1, 1, 1] Origin: [93.0629, 93.8035, -175.398] Direction: -0.998395 -0.0242415 0.0511818 0.0241115 -0.999704 -0.00315645 0.0512432 -0.00191732 0.998684

IndexToPointMatrix: -0.998395 -0.0242415 0.0511818 0.0241115 -0.999704 -0.00315645 0.0512432 -0.00191732 0.998684

PointToIndexMatrix: -0.998395 0.0241115 0.0512432 -0.0242415 -0.999704 -0.00191732 0.0511818 -0.00315645 0.998684

Inverse Direction: -0.998395 0.0241115 0.0512432 -0.0242415 -0.999704 -0.00191732 0.0511818 -0.00315645 0.998684

PixelContainer: ImportImageContainer (0x2fd6a70) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 2013 Debug: Off Object Name: Observers: none Pointer: 0x7f33e59e0010 Container manages memory: true Size: 12779520 Capacity: 12779520

 Weighting = 1
 Sampling strategy = regular
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 0.25

Transform = Affine Gradient step = 0.1 Update field sigma (voxel space) = 0 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Stage 3 State Image metric = Mattes Fixed image = Image (0x2fd6fe0) RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 2410 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2213 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [193, 229, 193] Spacing: [1, 1, 1] Origin: [96, 132, -78] Direction: -1 0 0 0 -1 0 0 0 1

IndexToPointMatrix: -1 0 0 0 -1 0 0 0 1

PointToIndexMatrix: -1 0 0 0 -1 0 0 0 1

Inverse Direction: -1 0 0 0 -1 0 0 0 1

PixelContainer: ImportImageContainer (0x2fd84b0) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 2210 Debug: Off Object Name: Observers: none Pointer: 0x7f33e18cb010 Container manages memory: true Size: 8530021 Capacity: 8530021

 Moving image = Image (0x2fd8fd0)

RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 2411 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2408 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [208, 240, 256] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [208, 240, 256] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [208, 240, 256] Spacing: [1, 1, 1] Origin: [93.0629, 93.8035, -175.398] Direction: -0.998395 -0.0242415 0.0511818 0.0241115 -0.999704 -0.00315645 0.0512432 -0.00191732 0.998684

IndexToPointMatrix: -0.998395 -0.0242415 0.0511818 0.0241115 -0.999704 -0.00315645 0.0512432 -0.00191732 0.998684

PointToIndexMatrix: -0.998395 0.0241115 0.0512432 -0.0242415 -0.999704 -0.00191732 0.0511818 -0.00315645 0.998684

Inverse Direction: -0.998395 0.0241115 0.0512432 -0.0242415 -0.999704 -0.00191732 0.0511818 -0.00315645 0.998684

PixelContainer: ImportImageContainer (0x2fdb220) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 2405 Debug: Off Object Name: Observers: none Pointer: 0x7f33db74a010 Container manages memory: true Size: 12779520 Capacity: 12779520

 Weighting = 1
 Sampling strategy = none
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 1

*** Running Euler3DTransform registration ***

DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -3.668267683264e-01, 1.797693134862e+308, 1.3953e+00, 1.3953e+00, 2DIAGNOSTIC, 2, -3.682425370891e-01, 1.797693134862e+308, 1.4045e+00, 9.2142e-03, 2DIAGNOSTIC, 3, -3.708280087473e-01, 1.797693134862e+308, 1.4149e+00, 1.0342e-02, 2DIAGNOSTIC, 4, -3.754160408461e-01, 1.797693134862e+308, 1.4246e+00, 9.7771e-03, 2DIAGNOSTIC, 5, -3.800385551961e-01, 1.797693134862e+308, 1.4362e+00, 1.1541e-02, 2DIAGNOSTIC, 6, -3.841154800394e-01, 1.797693134862e+308, 1.4456e+00, 9.4011e-03, 2DIAGNOSTIC, 7, -3.875280387433e-01, 1.797693134862e+308, 1.4552e+00, 9.6550e-03, 2DIAGNOSTIC, 8, -3.980727793176e-01, 1.797693134862e+308, 1.4671e+00, 1.1849e-02, 2DIAGNOSTIC, 9, -4.177670283292e-01, 1.797693134862e+308, 1.4776e+00, 1.0485e-02, 2DIAGNOSTIC, 10, -4.271678092787e-01, 9.466688213236e-03, 1.4907e+00, 1.3124e-02, 2DIAGNOSTIC, 11, -5.531239660542e-01, 1.750887075043e-02, 1.5066e+00, 1.5910e-02, 2DIAGNOSTIC, 12, -5.591275648886e-01, 2.245544636660e-02, 1.5166e+00, 9.9449e-03, 2DIAGNOSTIC, 13, -5.597937334110e-01, 2.465642146472e-02, 1.5281e+00, 1.1537e-02, 2DIAGNOSTIC, 14, -5.606934877307e-01, 2.459299382228e-02, 1.5394e+00, 1.1305e-02, 2DIAGNOSTIC, 15, -5.626119636837e-01, 2.258676728770e-02, 1.5505e+00, 1.1144e-02, 2DIAGNOSTIC, 16, -5.657942376089e-01, 1.905889345018e-02, 1.5651e+00, 1.4556e-02, 2DIAGNOSTIC, 17, -5.681889627589e-01, 1.450110173534e-02, 1.5842e+00, 1.9077e-02, 2DIAGNOSTIC, 18, -5.684832694038e-01, 9.660618000729e-03, 1.5948e+00, 1.0601e-02, 2DIAGNOSTIC, 19, -5.687291827848e-01, 5.228819946801e-03, 1.6043e+00, 9.5601e-03, 2DIAGNOSTIC, 20, -5.691115514849e-01, 1.032802777172e-03, 1.6154e+00, 1.1036e-02, 2DIAGNOSTIC, 21, -5.694470902908e-01, 7.696967812635e-04, 1.6278e+00, 1.2435e-02, 2DIAGNOSTIC, 22, -5.694768807822e-01, 6.237904020166e-04, 1.6388e+00, 1.0974e-02, 2DIAGNOSTIC, 23, -5.695493296207e-01, 4.547486405073e-04, 1.6502e+00, 1.1394e-02, 2DIAGNOSTIC, 24, -5.698094448079e-01, 2.882805889104e-04, 1.6606e+00, 1.0469e-02, 2DIAGNOSTIC, 25, -5.705091050401e-01, 1.689373148494e-04, 1.6714e+00, 1.0797e-02, 2DIAGNOSTIC, 26, -5.708620154990e-01, 1.203160322753e-04, 1.6896e+00, 1.8148e-02, 2DIAGNOSTIC, 27, -5.708843857870e-01, 1.155714934568e-04, 1.6998e+00, 1.0182e-02, 2DIAGNOSTIC, 28, -5.710634620439e-01, 1.103682341740e-04, 1.7130e+00, 1.3271e-02, 2DIAGNOSTIC, 29, -5.712902604148e-01, 1.042407477933e-04, 1.7237e+00, 1.0670e-02, 2DIAGNOSTIC, 30, -5.716472620836e-01, 1.021958567865e-04, 1.7346e+00, 1.0928e-02, 2DIAGNOSTIC, 31, -5.719889615070e-01, 1.028049734657e-04, 1.7479e+00, 1.3250e-02, 2DIAGNOSTIC, 32, -5.722671319728e-01, 9.926840003671e-05, 1.7645e+00, 1.6607e-02, 2DIAGNOSTIC, 33, -5.727177255994e-01, 9.555019275344e-05, 1.7780e+00, 1.3535e-02, 2DIAGNOSTIC, 34, -5.729285952524e-01, 9.037173723472e-05, 1.7894e+00, 1.1368e-02, 2DIAGNOSTIC, 35, -5.729976175575e-01, 8.896862965122e-05, 1.7991e+00, 9.6660e-03, 2DIAGNOSTIC, 36, -5.730798054016e-01, 8.601728768950e-05, 1.8125e+00, 1.3461e-02, 2DIAGNOSTIC, 37, -5.731035967165e-01, 7.581942890644e-05, 1.8220e+00, 9.4500e-03, 2DIAGNOSTIC, 38, -5.731602178322e-01, 6.241720092801e-05, 1.8349e+00, 1.2900e-02, 2DIAGNOSTIC, 39, -5.732759085260e-01, 4.860205598798e-05, 1.8479e+00, 1.2989e-02, 2DIAGNOSTIC, 40, -5.732670187275e-01, 3.567922481192e-05, 1.8590e+00, 1.1114e-02, 2DIAGNOSTIC, 41, -5.732864823328e-01, 2.492385223974e-05, 1.8698e+00, 1.0855e-02, 2DIAGNOSTIC, 42, -5.732873001083e-01, 1.590675768423e-05, 1.8810e+00, 1.1141e-02, 2DIAGNOSTIC, 43, -5.733445943423e-01, 1.221033379021e-05, 1.8922e+00, 1.1198e-02, 2DIAGNOSTIC, 44, -5.734921144931e-01, 1.194180385459e-05, 1.9040e+00, 1.1860e-02, 2DIAGNOSTIC, 45, -5.736052023566e-01, 1.273473826871e-05, 1.9144e+00, 1.0383e-02, 2DIAGNOSTIC, 46, -5.738501646439e-01, 1.617221726735e-05, 1.9299e+00, 1.5474e-02, 2DIAGNOSTIC, 47, -5.739735418033e-01, 1.960865754213e-05, 1.9431e+00, 1.3216e-02, 2DIAGNOSTIC, 48, -5.738899716529e-01, 2.074827410502e-05, 1.9540e+00, 1.0876e-02, 2DIAGNOSTIC, 49, -5.738689189966e-01, 2.100862810882e-05, 1.9667e+00, 1.2724e-02, 2DIAGNOSTIC, 50, -5.738717058436e-01, 1.923409785363e-05, 1.9788e+00, 1.2100e-02, 2DIAGNOSTIC, 51, -5.738732731578e-01, 1.593935059713e-05, 1.9887e+00, 9.9249e-03, 2DIAGNOSTIC, 52, -5.738779860398e-01, 1.136333182995e-05, 2.0013e+00, 1.2580e-02, 2DIAGNOSTIC, 53, -5.738823842484e-01, 6.584194559445e-06, 2.0123e+00, 1.0953e-02, 2DIAGNOSTIC, 54, -5.738627497085e-01, 2.701963537941e-06, 2.0234e+00, 1.1094e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -4.771906793464e-01, 1.797693134862e+308, 3.5217e+00, 1.4983e+00, 2DIAGNOSTIC, 2, -4.776726643556e-01, 1.797693134862e+308, 3.5935e+00, 7.1867e-02, 2DIAGNOSTIC, 3, -4.786859669927e-01, 1.797693134862e+308, 3.6701e+00, 7.6570e-02, 2DIAGNOSTIC, 4, -4.803822274616e-01, 1.797693134862e+308, 3.7399e+00, 6.9798e-02, 2DIAGNOSTIC, 5, -4.817122967896e-01, 1.797693134862e+308, 3.8134e+00, 7.3519e-02, 2DIAGNOSTIC, 6, -4.826176660953e-01, 1.797693134862e+308, 3.8831e+00, 6.9664e-02, 2DIAGNOSTIC, 7, -4.831829469992e-01, 1.797693134862e+308, 3.9730e+00, 8.9907e-02, 2DIAGNOSTIC, 8, -4.835422758377e-01, 1.797693134862e+308, 4.0646e+00, 9.1627e-02, 2DIAGNOSTIC, 9, -4.836287798346e-01, 1.797693134862e+308, 4.1363e+00, 7.1666e-02, 2DIAGNOSTIC, 10, -4.840205875096e-01, 1.001215183552e-03, 4.2097e+00, 7.3461e-02, 2DIAGNOSTIC, 11, -4.849831307285e-01, 8.182423557929e-04, 4.2805e+00, 7.0724e-02, 2DIAGNOSTIC, 12, -4.860816961951e-01, 6.693402904271e-04, 4.3718e+00, 9.1361e-02, 2DIAGNOSTIC, 13, -4.867302095974e-01, 5.568390189789e-04, 4.4462e+00, 7.4352e-02, 2DIAGNOSTIC, 14, -4.869635963613e-01, 4.908681823859e-04, 4.5907e+00, 1.4456e-01, 2DIAGNOSTIC, 15, -4.870422070528e-01, 4.442602229456e-04, 4.6717e+00, 8.0950e-02, 2DIAGNOSTIC, 16, -4.871757032964e-01, 4.004054478513e-04, 4.7421e+00, 7.0371e-02, 2DIAGNOSTIC, 17, -4.873370458640e-01, 3.492925406380e-04, 4.8126e+00, 7.0558e-02, 2DIAGNOSTIC, 18, -4.875199981185e-01, 2.895270938258e-04, 4.8830e+00, 7.0426e-02, 2DIAGNOSTIC, 19, -4.877037263642e-01, 2.181200611438e-04, 4.9535e+00, 7.0465e-02, 2DIAGNOSTIC, 20, -4.878059243070e-01, 1.480998962217e-04, 5.0239e+00, 7.0443e-02, 2DIAGNOSTIC, 21, -4.879335505952e-01, 1.010393649818e-04, 5.1136e+00, 8.9692e-02, 2DIAGNOSTIC, 22, -4.879980361919e-01, 7.953808524551e-05, 5.1938e+00, 8.0182e-02, 2DIAGNOSTIC, 23, -4.880215039824e-01, 6.958296624062e-05, 5.3244e+00, 1.3053e-01, 2DIAGNOSTIC, 24, -4.879985017054e-01, 5.921251658302e-05, 5.4041e+00, 7.9718e-02, 2DIAGNOSTIC, 25, -4.880214452996e-01, 4.662913044431e-05, 5.4828e+00, 7.8749e-02, 2DIAGNOSTIC, 26, -4.880095793633e-01, 3.343494906081e-05, 5.5626e+00, 7.9829e-02, 2DIAGNOSTIC, 27, -4.880333127035e-01, 2.214683565115e-05, 5.6424e+00, 7.9706e-02, 2DIAGNOSTIC, 28, -4.880263863258e-01, 1.331353195856e-05, 5.7124e+00, 7.0092e-02, 2DIAGNOSTIC, 29, -4.880664230663e-01, 8.465549463751e-06, 5.7923e+00, 7.9883e-02, 2DIAGNOSTIC, 30, -4.880811769570e-01, 5.458842913961e-06, 5.8640e+00, 7.1718e-02, 2DIAGNOSTIC, 31, -4.881092424489e-01, 5.134279358734e-06, 5.9515e+00, 8.7500e-02, 2DIAGNOSTIC, 32, -4.881143492012e-01, 5.698246704648e-06, 6.0309e+00, 7.9380e-02, 2DIAGNOSTIC, 33, -4.881119024983e-01, 6.173665377050e-06, 6.0996e+00, 6.8651e-02, 2DIAGNOSTIC, 34, -4.881256688541e-01, 5.958834222428e-06, 6.2000e+00, 1.0044e-01, 2DIAGNOSTIC, 35, -4.881292916898e-01, 5.718059159443e-06, 6.2838e+00, 8.3778e-02, 2DIAGNOSTIC, 36, -4.881211081302e-01, 4.697726067773e-06, 6.3564e+00, 7.2621e-02, 2DIAGNOSTIC, 37, -4.881212428418e-01, 3.767170208991e-06, 6.4552e+00, 9.8748e-02, 2DIAGNOSTIC, 38, -4.881329528525e-01, 2.673899060990e-06, 6.5411e+00, 8.5922e-02, 2DIAGNOSTIC, 39, -4.881764760940e-01, 2.704525986941e-06, 6.6313e+00, 9.0228e-02, 2DIAGNOSTIC, 40, -4.881866837937e-01, 2.889945017310e-06, 6.7053e+00, 7.3960e-02, 2DIAGNOSTIC, 41, -4.882050890175e-01, 3.537845204744e-06, 6.7786e+00, 7.3298e-02, 2DIAGNOSTIC, 42, -4.882732552858e-01, 4.919300735824e-06, 6.8521e+00, 7.3553e-02, 2DIAGNOSTIC, 43, -4.884235997215e-01, 7.816475830379e-06, 6.9763e+00, 1.2419e-01, 2DIAGNOSTIC, 44, -4.884868284758e-01, 1.087219640771e-05, 7.0505e+00, 7.4221e-02, 2DIAGNOSTIC, 45, -4.884998896612e-01, 1.305261233587e-05, 7.1230e+00, 7.2474e-02, 2DIAGNOSTIC, 46, -4.885593010279e-01, 1.464666393629e-05, 7.1963e+00, 7.3274e-02, 2DIAGNOSTIC, 47, -4.888520836921e-01, 1.845383990430e-05, 7.3196e+00, 1.2332e-01, 2DIAGNOSTIC, 48, -4.888431192910e-01, 2.029535592057e-05, 7.4026e+00, 8.3009e-02, 2DIAGNOSTIC, 49, -4.888491486178e-01, 2.082038335589e-05, 7.4856e+00, 8.2990e-02, 2DIAGNOSTIC, 50, -4.888491247427e-01, 1.958674706866e-05, 7.5582e+00, 7.2616e-02, 2DIAGNOSTIC, 51, -4.888441656490e-01, 1.672351562145e-05, 7.6311e+00, 7.2911e-02, 2DIAGNOSTIC, 52, -4.888637800326e-01, 1.332023075508e-05, 7.7143e+00, 8.3177e-02, 2DIAGNOSTIC, 53, -4.888748592607e-01, 1.058004923297e-05, 7.7956e+00, 8.1257e-02, 2DIAGNOSTIC, 54, -4.888720060888e-01, 7.689706201016e-06, 7.8786e+00, 8.3016e-02, 2DIAGNOSTIC, 55, -4.888746806816e-01, 4.413805789426e-06, 7.9615e+00, 8.2908e-02, 2DIAGNOSTIC, 56, -4.888811237046e-01, 1.486905308736e-06, 8.0440e+00, 8.2541e-02, 2DIAGNOSTIC, 57, -4.888836615982e-01, 1.597240277460e-06, 8.1154e+00, 7.1347e-02, 2DIAGNOSTIC, 58, -4.888949687421e-01, 1.623079018648e-06, 8.1867e+00, 7.1317e-02, 2DIAGNOSTIC, 59, -4.889528129382e-01, 2.177468018612e-06, 8.2597e+00, 7.2963e-02, 2DIAGNOSTIC, 60, -4.893019821670e-01, 5.942426737075e-06, 8.3618e+00, 1.0213e-01, 2DIAGNOSTIC, 61, -4.893930501591e-01, 9.793751744133e-06, 8.4446e+00, 8.2831e-02, 2DIAGNOSTIC, 62, -4.893976920280e-01, 1.287649572864e-05, 8.5273e+00, 8.2709e-02, 2DIAGNOSTIC, 63, -4.894075503241e-01, 1.492479627221e-05, 8.6106e+00, 8.3265e-02, 2DIAGNOSTIC, 64, -4.894525637560e-01, 1.589555939251e-05, 8.7460e+00, 1.3541e-01, 2DIAGNOSTIC, 65, -4.894428340120e-01, 1.522287512503e-05, 8.8288e+00, 8.2833e-02, 2DIAGNOSTIC, 66, -4.894540914954e-01, 1.330034306110e-05, 8.9020e+00, 7.3156e-02, 2DIAGNOSTIC, 67, -4.894657184349e-01, 1.037536779879e-05, 8.9739e+00, 7.1913e-02, 2DIAGNOSTIC, 68, -4.894913512114e-01, 6.928282067647e-06, 9.0570e+00, 8.3084e-02, 2DIAGNOSTIC, 69, -4.894901040301e-01, 3.352822323813e-06, 9.1412e+00, 8.4264e-02, 2DIAGNOSTIC, 70, -4.894871228695e-01, 2.469704626728e-06, 9.2248e+00, 8.3522e-02, 2DIAGNOSTIC, 71, -4.895048571074e-01, 2.319380114930e-06, 9.2965e+00, 7.1706e-02, 2DIAGNOSTIC, 72, -4.895113834215e-01, 2.076938444961e-06, 9.3680e+00, 7.1490e-02, 2DIAGNOSTIC, 73, -4.895292841559e-01, 1.891611955698e-06, 9.4396e+00, 7.1621e-02, 2DIAGNOSTIC, 74, -4.895715029290e-01, 2.261444499030e-06, 9.5311e+00, 9.1477e-02, 2DIAGNOSTIC, 75, -4.895846336328e-01, 2.466081043572e-06, 9.6580e+00, 1.2698e-01, 2DIAGNOSTIC, 76, -4.895856566180e-01, 2.563110441958e-06, 9.7398e+00, 8.1764e-02, 2DIAGNOSTIC, 77, -4.895790175203e-01, 2.486799438399e-06, 9.8190e+00, 7.9155e-02, 2DIAGNOSTIC, 78, -4.895709875442e-01, 2.345592767987e-06, 9.8884e+00, 6.9402e-02, 2DIAGNOSTIC, 79, -4.895659051218e-01, 1.972409777272e-06, 9.9668e+00, 7.8413e-02, 2DIAGNOSTIC, 80, -4.895597053226e-01, 1.386007599002e-06, 1.0060e+01, 9.3090e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -4.454057963872e-01, 1.797693134862e+308, 1.2019e+01, 1.9595e+00, 2DIAGNOSTIC, 2, -4.456690392455e-01, 1.797693134862e+308, 1.2476e+01, 4.5642e-01, 2DIAGNOSTIC, 3, -4.460815207136e-01, 1.797693134862e+308, 1.2897e+01, 4.2158e-01, 2DIAGNOSTIC, 4, -4.465105436267e-01, 1.797693134862e+308, 1.3334e+01, 4.3695e-01, 2DIAGNOSTIC, 5, -4.468664732856e-01, 1.797693134862e+308, 1.3754e+01, 4.1966e-01, 2DIAGNOSTIC, 6, -4.472064827319e-01, 1.797693134862e+308, 1.4212e+01, 4.5762e-01, 2DIAGNOSTIC, 7, -4.474996372785e-01, 1.797693134862e+308, 1.4670e+01, 4.5845e-01, 2DIAGNOSTIC, 8, -4.475818162162e-01, 1.797693134862e+308, 1.5248e+01, 5.7805e-01, 2DIAGNOSTIC, 9, -4.476839614550e-01, 1.797693134862e+308, 1.5978e+01, 7.2968e-01, 2DIAGNOSTIC, 10, -4.477122857324e-01, 3.618009524106e-04, 1.6440e+01, 4.6183e-01, 2DIAGNOSTIC, 11, -4.477700775554e-01, 2.764638913175e-04, 1.6891e+01, 4.5103e-01, 2DIAGNOSTIC, 12, -4.478161459591e-01, 1.968649083463e-04, 1.7375e+01, 4.8491e-01, 2DIAGNOSTIC, 13, -4.478314388229e-01, 1.326505853236e-04, 1.7880e+01, 5.0403e-01, 2DIAGNOSTIC, 14, -4.478315550965e-01, 8.517610132389e-05, 1.8392e+01, 5.1227e-01, 2DIAGNOSTIC, 15, -4.478334156307e-01, 5.142150062953e-05, 1.8903e+01, 5.1110e-01, 2DIAGNOSTIC, 16, -4.478312205357e-01, 3.051997030414e-05, 1.9793e+01, 8.8963e-01, 2DIAGNOSTIC, 17, -4.478312128492e-01, 2.035195587822e-05, 2.0341e+01, 5.4858e-01, 2DIAGNOSTIC, 18, -4.478304134149e-01, 1.240793030266e-05, 2.0852e+01, 5.1117e-01, 2DIAGNOSTIC, 19, -4.478286748367e-01, 7.691752650280e-06, 2.1403e+01, 5.5087e-01, 2DIAGNOSTIC, 20, -4.478288599185e-01, 3.767889934517e-06, 2.1969e+01, 5.6631e-01, 2DIAGNOSTIC, 21, -4.478279655506e-01, 1.702207060708e-06, 2.2485e+01, 5.1546e-01, 2DIAGNOSTIC, 22, -4.478265614063e-01, 1.085494478276e-06, 2.2921e+01, 4.3566e-01, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -4.231231150175e-01, 1.797693134862e+308, 2.6647e+01, 3.7268e+00, Elapsed time (stage 0): 2.7582e+01

*** Running AffineTransform registration ***

DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -5.684675424467e-01, 1.797693134862e+308, 1.3778e+00, 1.3778e+00, 2DIAGNOSTIC, 2, -5.694734458927e-01, 1.797693134862e+308, 1.3875e+00, 9.6121e-03, 2DIAGNOSTIC, 3, -5.713299446975e-01, 1.797693134862e+308, 1.3975e+00, 1.0026e-02, 2DIAGNOSTIC, 4, -5.771211326799e-01, 1.797693134862e+308, 1.4098e+00, 1.2284e-02, 2DIAGNOSTIC, 5, -6.040168620445e-01, 1.797693134862e+308, 1.4212e+00, 1.1481e-02, 2DIAGNOSTIC, 6, -6.151879902098e-01, 1.797693134862e+308, 1.4310e+00, 9.7849e-03, 2DIAGNOSTIC, 7, -6.535237567568e-01, 1.797693134862e+308, 1.4447e+00, 1.3667e-02, 2DIAGNOSTIC, 8, -6.727890291266e-01, 1.797693134862e+308, 1.4586e+00, 1.3936e-02, 2DIAGNOSTIC, 9, -6.810865230913e-01, 1.797693134862e+308, 1.4683e+00, 9.6309e-03, 2DIAGNOSTIC, 10, -7.047579705042e-01, 1.566067543077e-02, 1.4930e+00, 2.4757e-02, 2DIAGNOSTIC, 11, -7.049986036609e-01, 1.492728021524e-02, 1.5043e+00, 1.1240e-02, 2DIAGNOSTIC, 12, -7.064593930499e-01, 1.309798271402e-02, 1.5159e+00, 1.1613e-02, 2DIAGNOSTIC, 13, -7.086145563372e-01, 1.054684569494e-02, 1.5261e+00, 1.0245e-02, 2DIAGNOSTIC, 14, -7.116286580496e-01, 7.707752956577e-03, 1.5387e+00, 1.2607e-02, 2DIAGNOSTIC, 15, -7.147621561686e-01, 5.456140279153e-03, 1.5494e+00, 1.0721e-02, 2DIAGNOSTIC, 16, -7.180907014886e-01, 3.383774068007e-03, 1.5597e+00, 1.0221e-02, 2DIAGNOSTIC, 17, -7.229360271565e-01, 2.359519230711e-03, 1.5721e+00, 1.2407e-02, 2DIAGNOSTIC, 18, -7.289773488723e-01, 1.843660736882e-03, 1.5829e+00, 1.0824e-02, 2DIAGNOSTIC, 19, -7.377621849181e-01, 1.582127108522e-03, 1.5947e+00, 1.1797e-02, 2DIAGNOSTIC, 20, -7.531636477751e-01, 2.026318631799e-03, 1.6151e+00, 2.0426e-02, 2DIAGNOSTIC, 21, -7.638292707702e-01, 2.446781129398e-03, 1.6278e+00, 1.2643e-02, 2DIAGNOSTIC, 22, -7.674914805467e-01, 2.692761342688e-03, 1.6423e+00, 1.4511e-02, 2DIAGNOSTIC, 23, -7.697786552913e-01, 2.746534941228e-03, 1.6541e+00, 1.1796e-02, 2DIAGNOSTIC, 24, -7.747642537867e-01, 2.675521641424e-03, 1.6674e+00, 1.3346e-02, 2DIAGNOSTIC, 25, -7.868721104893e-01, 2.604577778708e-03, 1.6797e+00, 1.2298e-02, 2DIAGNOSTIC, 26, -8.038450899788e-01, 2.606377596186e-03, 1.6966e+00, 1.6920e-02, 2DIAGNOSTIC, 27, -8.148710864226e-01, 2.598474361024e-03, 1.7084e+00, 1.1801e-02, 2DIAGNOSTIC, 28, -8.285935725716e-01, 2.632436049687e-03, 1.7204e+00, 1.1925e-02, 2DIAGNOSTIC, 29, -8.352625026135e-01, 2.624219099759e-03, 1.7382e+00, 1.7874e-02, 2DIAGNOSTIC, 30, -8.369157676594e-01, 2.591590037505e-03, 1.7485e+00, 1.0311e-02, 2DIAGNOSTIC, 31, -8.434149660798e-01, 2.534699652333e-03, 1.7614e+00, 1.2828e-02, 2DIAGNOSTIC, 32, -8.470397207533e-01, 2.330458021031e-03, 1.7719e+00, 1.0477e-02, 2DIAGNOSTIC, 33, -8.482387366454e-01, 1.961968403023e-03, 1.7827e+00, 1.0876e-02, 2DIAGNOSTIC, 34, -8.492851932807e-01, 1.502329154688e-03, 1.7965e+00, 1.3811e-02, 2DIAGNOSTIC, 35, -8.508373993503e-01, 1.080660289452e-03, 1.8104e+00, 1.3875e-02, 2DIAGNOSTIC, 36, -8.514833262784e-01, 7.708536655278e-04, 1.8248e+00, 1.4357e-02, 2DIAGNOSTIC, 37, -8.529706347173e-01, 5.336580740615e-04, 1.8347e+00, 9.9230e-03, 2DIAGNOSTIC, 38, -8.561211294813e-01, 4.291293487590e-04, 1.8453e+00, 1.0564e-02, 2DIAGNOSTIC, 39, -8.585977680156e-01, 3.795180975052e-04, 1.8599e+00, 1.4681e-02, 2DIAGNOSTIC, 40, -8.596905114957e-01, 3.212933744873e-04, 1.8740e+00, 1.4078e-02, 2DIAGNOSTIC, 41, -8.598111544641e-01, 2.965579881143e-04, 1.8857e+00, 1.1634e-02, 2DIAGNOSTIC, 42, -8.605147484850e-01, 2.840270453861e-04, 1.8965e+00, 1.0801e-02, 2DIAGNOSTIC, 43, -8.609697113859e-01, 2.590435057342e-04, 1.9069e+00, 1.0419e-02, 2DIAGNOSTIC, 44, -8.612298533033e-01, 2.212523538909e-04, 1.9181e+00, 1.1249e-02, 2DIAGNOSTIC, 45, -8.615195709494e-01, 1.799027942179e-04, 1.9287e+00, 1.0578e-02, 2DIAGNOSTIC, 46, -8.617356336392e-01, 1.307119011084e-04, 1.9420e+00, 1.3318e-02, 2DIAGNOSTIC, 47, -8.621660814395e-01, 8.619746681710e-05, 1.9622e+00, 2.0170e-02, 2DIAGNOSTIC, 48, -8.621379707694e-01, 5.915433552222e-05, 1.9744e+00, 1.2215e-02, 2DIAGNOSTIC, 49, -8.621677654883e-01, 4.655153800208e-05, 1.9847e+00, 1.0259e-02, 2DIAGNOSTIC, 50, -8.622094752726e-01, 3.858212294934e-05, 1.9942e+00, 9.5770e-03, 2DIAGNOSTIC, 51, -8.622561860186e-01, 2.841479567243e-05, 2.0068e+00, 1.2518e-02, 2DIAGNOSTIC, 52, -8.622524848799e-01, 2.087471488343e-05, 2.0168e+00, 9.9978e-03, 2DIAGNOSTIC, 53, -8.622861809196e-01, 1.509149261687e-05, 2.0276e+00, 1.0799e-02, 2DIAGNOSTIC, 54, -8.623055830258e-01, 1.005948458341e-05, 2.0406e+00, 1.3003e-02, 2DIAGNOSTIC, 55, -8.622835956741e-01, 6.086502641299e-06, 2.0505e+00, 9.9669e-03, 2DIAGNOSTIC, 56, -8.623319044831e-01, 3.390697333242e-06, 2.0615e+00, 1.0954e-02, 2DIAGNOSTIC, 57, -8.623713666441e-01, 3.531995254040e-06, 2.0755e+00, 1.4004e-02, 2DIAGNOSTIC, 58, -8.625579606271e-01, 4.372266581541e-06, 2.0916e+00, 1.6147e-02, 2DIAGNOSTIC, 59, -8.625710104965e-01, 5.050933879432e-06, 2.1040e+00, 1.2360e-02, 2DIAGNOSTIC, 60, -8.625820069215e-01, 5.605100971060e-06, 2.1155e+00, 1.1545e-02, 2DIAGNOSTIC, 61, -8.626030172259e-01, 6.074343164457e-06, 2.1262e+00, 1.0621e-02, 2DIAGNOSTIC, 62, -8.625428302796e-01, 5.610015568244e-06, 2.1393e+00, 1.3178e-02, 2DIAGNOSTIC, 63, -8.625307704039e-01, 4.793112318546e-06, 2.1492e+00, 9.8391e-03, 2DIAGNOSTIC, 64, -8.625104326558e-01, 3.595787081343e-06, 2.1616e+00, 1.2443e-02, 2DIAGNOSTIC, 65, -8.625180323161e-01, 2.072495179233e-06, 2.1753e+00, 1.3725e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -7.628663819722e-01, 1.797693134862e+308, 3.6653e+00, 1.4900e+00, 2DIAGNOSTIC, 2, -7.635469582898e-01, 1.797693134862e+308, 3.7541e+00, 8.8778e-02, 2DIAGNOSTIC, 3, -7.646107024945e-01, 1.797693134862e+308, 3.8437e+00, 8.9599e-02, 2DIAGNOSTIC, 4, -7.660988433448e-01, 1.797693134862e+308, 3.9333e+00, 8.9647e-02, 2DIAGNOSTIC, 5, -7.678761379957e-01, 1.797693134862e+308, 4.0234e+00, 9.0104e-02, 2DIAGNOSTIC, 6, -7.689045596153e-01, 1.797693134862e+308, 4.1337e+00, 1.1029e-01, 2DIAGNOSTIC, 7, -7.690111405147e-01, 1.797693134862e+308, 4.2052e+00, 7.1467e-02, 2DIAGNOSTIC, 8, -7.693443203434e-01, 1.797693134862e+308, 4.2794e+00, 7.4245e-02, 2DIAGNOSTIC, 9, -7.697026316566e-01, 1.797693134862e+308, 4.3518e+00, 7.2328e-02, 2DIAGNOSTIC, 10, -7.700618581260e-01, 6.487351590635e-04, 4.4283e+00, 7.6487e-02, 2DIAGNOSTIC, 11, -7.704446525917e-01, 5.042631360434e-04, 4.5006e+00, 7.2357e-02, 2DIAGNOSTIC, 12, -7.716713835304e-01, 3.980681316403e-04, 4.5911e+00, 9.0514e-02, 2DIAGNOSTIC, 13, -7.725473048766e-01, 3.267361552926e-04, 4.7393e+00, 1.4818e-01, 2DIAGNOSTIC, 14, -7.725834614741e-01, 2.751621330017e-04, 4.8131e+00, 7.3813e-02, 2DIAGNOSTIC, 15, -7.726075326686e-01, 2.499382877396e-04, 4.8890e+00, 7.5891e-02, 2DIAGNOSTIC, 16, -7.726502825482e-01, 2.300999599729e-04, 4.9644e+00, 7.5357e-02, 2DIAGNOSTIC, 17, -7.726921843590e-01, 1.942920794797e-04, 5.0405e+00, 7.6158e-02, 2DIAGNOSTIC, 18, -7.727471700789e-01, 1.522731768624e-04, 5.1159e+00, 7.5347e-02, 2DIAGNOSTIC, 19, -7.728109941479e-01, 1.091499187817e-04, 5.1918e+00, 7.5917e-02, 2DIAGNOSTIC, 20, -7.728696081453e-01, 6.839709946426e-05, 5.2774e+00, 8.5582e-02, 2DIAGNOSTIC, 21, -7.729410368862e-01, 3.286304690087e-05, 5.4417e+00, 1.6432e-01, 2DIAGNOSTIC, 22, -7.729559650152e-01, 1.804496542573e-05, 5.5132e+00, 7.1550e-02, 2DIAGNOSTIC, 23, -7.729577566631e-01, 1.704993673248e-05, 5.5865e+00, 7.3288e-02, 2DIAGNOSTIC, 24, -7.729603485448e-01, 1.527043813770e-05, 5.6622e+00, 7.5651e-02, 2DIAGNOSTIC, 25, -7.729713337760e-01, 1.282550027471e-05, 5.7479e+00, 8.5761e-02, 2DIAGNOSTIC, 26, -7.729818704725e-01, 1.022163079227e-05, 5.8230e+00, 7.5023e-02, 2DIAGNOSTIC, 27, -7.729797440168e-01, 7.500565123324e-06, 5.9086e+00, 8.5615e-02, 2DIAGNOSTIC, 28, -7.729847251474e-01, 5.172399552021e-06, 5.9840e+00, 7.5460e-02, 2DIAGNOSTIC, 29, -7.729778616421e-01, 3.340225989537e-06, 6.0733e+00, 8.9263e-02, 2DIAGNOSTIC, 30, -7.729817624448e-01, 2.164272946081e-06, 6.1509e+00, 7.7551e-02, 2DIAGNOSTIC, 31, -7.729953168147e-01, 1.962647106425e-06, 6.2233e+00, 7.2418e-02, 2DIAGNOSTIC, 32, -7.730100303934e-01, 2.023001489465e-06, 6.3130e+00, 8.9768e-02, 2DIAGNOSTIC, 33, -7.730011003486e-01, 1.902459486017e-06, 6.4422e+00, 1.2920e-01, 2DIAGNOSTIC, 34, -7.730087604988e-01, 1.816859001854e-06, 6.5148e+00, 7.2554e-02, 2DIAGNOSTIC, 35, -7.729989376770e-01, 1.660424424343e-06, 6.5902e+00, 7.5350e-02, 2DIAGNOSTIC, 36, -7.729995397042e-01, 1.554831173988e-06, 6.6654e+00, 7.5298e-02, 2DIAGNOSTIC, 37, -7.730005485073e-01, 1.375782038078e-06, 6.7407e+00, 7.5249e-02, 2DIAGNOSTIC, 38, -7.730019395347e-01, 1.222396590936e-06, 6.8274e+00, 8.6659e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -7.116036937662e-01, 1.797693134862e+308, 8.8260e+00, 1.9986e+00, 2DIAGNOSTIC, 2, -7.119979355228e-01, 1.797693134862e+308, 9.2898e+00, 4.6382e-01, 2DIAGNOSTIC, 3, -7.122958001418e-01, 1.797693134862e+308, 9.7106e+00, 4.2075e-01, 2DIAGNOSTIC, 4, -7.125094135632e-01, 1.797693134862e+308, 1.0130e+01, 4.1962e-01, 2DIAGNOSTIC, 5, -7.126440437950e-01, 1.797693134862e+308, 1.0611e+01, 4.8062e-01, 2DIAGNOSTIC, 6, -7.128405457199e-01, 1.797693134862e+308, 1.1141e+01, 5.2997e-01, 2DIAGNOSTIC, 7, -7.128963362639e-01, 1.797693134862e+308, 1.1561e+01, 4.2056e-01, 2DIAGNOSTIC, 8, -7.129817299207e-01, 1.797693134862e+308, 1.2050e+01, 4.8847e-01, 2DIAGNOSTIC, 9, -7.130201644278e-01, 1.797693134862e+308, 1.2577e+01, 5.2738e-01, 2DIAGNOSTIC, 10, -7.130582775064e-01, 1.245221579417e-04, 1.2992e+01, 4.1438e-01, 2DIAGNOSTIC, 11, -7.130916281950e-01, 8.574705724997e-05, 1.3465e+01, 4.7316e-01, 2DIAGNOSTIC, 12, -7.131474021360e-01, 6.077719829807e-05, 1.4049e+01, 5.8462e-01, 2DIAGNOSTIC, 13, -7.131757137764e-01, 4.429618273565e-05, 1.4466e+01, 4.1653e-01, 2DIAGNOSTIC, 14, -7.131794898111e-01, 3.252527955962e-05, 1.4881e+01, 4.1526e-01, 2DIAGNOSTIC, 15, -7.131900835041e-01, 2.333458774402e-05, 1.5298e+01, 4.1721e-01, 2DIAGNOSTIC, 16, -7.132533740279e-01, 1.980575383259e-05, 1.5772e+01, 4.7387e-01, 2DIAGNOSTIC, 17, -7.132855653389e-01, 1.701805371968e-05, 1.6469e+01, 6.9718e-01, 2DIAGNOSTIC, 18, -7.132838242906e-01, 1.497661003565e-05, 1.6999e+01, 5.2996e-01, 2DIAGNOSTIC, 19, -7.132834739387e-01, 1.275636442060e-05, 1.7417e+01, 4.1743e-01, 2DIAGNOSTIC, 20, -7.132851645042e-01, 1.052717909675e-05, 1.7842e+01, 4.2510e-01, 2DIAGNOSTIC, 21, -7.132862324872e-01, 8.283806504243e-06, 1.8315e+01, 4.7285e-01, 2DIAGNOSTIC, 22, -7.132894796826e-01, 6.656948338978e-06, 1.8732e+01, 4.1740e-01, 2DIAGNOSTIC, 23, -7.132884972311e-01, 5.173570918789e-06, 1.9148e+01, 4.1543e-01, 2DIAGNOSTIC, 24, -7.132940020885e-01, 3.630613858545e-06, 1.9565e+01, 4.1768e-01, 2DIAGNOSTIC, 25, -7.132979058627e-01, 2.200343127014e-06, 2.0037e+01, 4.7160e-01, 2DIAGNOSTIC, 26, -7.133011789209e-01, 1.797364406336e-06, 2.0455e+01, 4.1781e-01, 2DIAGNOSTIC, 27, -7.133004888983e-01, 1.836212025326e-06, 2.0927e+01, 4.7229e-01, 2DIAGNOSTIC, 28, -7.132995763755e-01, 1.774681208544e-06, 2.2355e+01, 1.4277e+00, 2DIAGNOSTIC, 29, -7.132995763743e-01, 1.652100733822e-06, 2.3614e+01, 1.2596e+00, 2DIAGNOSTIC, 30, -7.132995763743e-01, 1.505991738947e-06, 2.4139e+01, 5.2526e-01, 2DIAGNOSTIC, 31, -7.132995763743e-01, 1.339644693607e-06, 2.4645e+01, 5.0572e-01, 2DIAGNOSTIC, 32, -7.132995763743e-01, 1.196476693464e-06, 2.5120e+01, 4.7471e-01, 2DIAGNOSTIC, 33, -7.132995763743e-01, 1.030479742987e-06, 2.5594e+01, 4.7429e-01, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -6.551279340618e-01, 1.797693134862e+308, 2.9770e+01, 4.1763e+00, Elapsed time (stage 1): 3.0681e+01

*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) ***

XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -8.320805145718e-01, 1.797693134862e+308, 1.3917e+00, 1.3917e+00, 1DIAGNOSTIC, 2, -8.540973126470e-01, 1.797693134862e+308, 1.4805e+00, 8.8880e-02, 1DIAGNOSTIC, 3, -8.707513147268e-01, 1.797693134862e+308, 1.5682e+00, 8.7649e-02, 1DIAGNOSTIC, 4, -8.840331081147e-01, 1.797693134862e+308, 1.6538e+00, 8.5573e-02, 1DIAGNOSTIC, 5, -8.927654364803e-01, 1.797693134862e+308, 1.7405e+00, 8.6730e-02, 1DIAGNOSTIC, 6, -8.988395909538e-01, 1.797693134862e+308, 1.8298e+00, 8.9336e-02, 1DIAGNOSTIC, 7, -9.038057641391e-01, 1.797693134862e+308, 1.9188e+00, 8.8917e-02, 1DIAGNOSTIC, 8, -9.066365828276e-01, 1.797693134862e+308, 2.0078e+00, 8.9013e-02, 1DIAGNOSTIC, 9, -9.099593618872e-01, 1.797693134862e+308, 2.0965e+00, 8.8739e-02, 1DIAGNOSTIC, 10, -9.124255359652e-01, 5.279234986924e-03, 2.1869e+00, 9.0441e-02, 1DIAGNOSTIC, 11, -9.147270968975e-01, 3.563806649889e-03, 2.2773e+00, 9.0339e-02, 1DIAGNOSTIC, 12, -9.162608088813e-01, 2.441507375593e-03, 2.3677e+00, 9.0421e-02, 1DIAGNOSTIC, 13, -9.182216948491e-01, 1.726210135117e-03, 2.4772e+00, 1.0951e-01, 1DIAGNOSTIC, 14, -9.205156555400e-01, 1.308542138800e-03, 2.5962e+00, 1.1901e-01, 1DIAGNOSTIC, 15, -9.216788623311e-01, 1.034793271734e-03, 2.6973e+00, 1.0108e-01, 1DIAGNOSTIC, 16, -9.228380795495e-01, 8.429033475001e-04, 2.7924e+00, 9.5126e-02, 1DIAGNOSTIC, 17, -9.236005644258e-01, 7.027743426267e-04, 2.8833e+00, 9.0831e-02, 1DIAGNOSTIC, 18, -9.251398240848e-01, 5.893010865371e-04, 2.9752e+00, 9.1923e-02, 1DIAGNOSTIC, 19, -9.258759410988e-01, 4.995324679827e-04, 3.0678e+00, 9.2663e-02, 1DIAGNOSTIC, 20, -9.272597496936e-01, 4.326421508355e-04, 3.1581e+00, 9.0262e-02, 1DIAGNOSTIC, 21, -9.284602232561e-01, 3.842810702510e-04, 3.2486e+00, 9.0464e-02, 1DIAGNOSTIC, 22, -9.293442896650e-01, 3.386331445273e-04, 3.3427e+00, 9.4090e-02, 1DIAGNOSTIC, 23, -9.303644500592e-01, 3.054062019850e-04, 3.4329e+00, 9.0280e-02, 1DIAGNOSTIC, 24, -9.314229335977e-01, 2.898588583429e-04, 3.5237e+00, 9.0756e-02, 1DIAGNOSTIC, 25, -9.321794782757e-01, 2.720995408114e-04, 3.6168e+00, 9.3100e-02, 1DIAGNOSTIC, 26, -9.327742991242e-01, 2.512049411382e-04, 3.7417e+00, 1.2485e-01, 1DIAGNOSTIC, 27, -9.333851208215e-01, 2.239265160756e-04, 3.8543e+00, 1.1264e-01, 1DIAGNOSTIC, 28, -9.340140241160e-01, 2.017007248460e-04, 3.9588e+00, 1.0454e-01, 1DIAGNOSTIC, 29, -9.347384125014e-01, 1.774086150439e-04, 4.0493e+00, 9.0520e-02, 1DIAGNOSTIC, 30, -9.354557926596e-01, 1.596026948366e-04, 4.1413e+00, 9.1944e-02, 1DIAGNOSTIC, 31, -9.363237274702e-01, 1.485922110241e-04, 4.2326e+00, 9.1308e-02, 1DIAGNOSTIC, 32, -9.365776901765e-01, 1.351347411859e-04, 4.3234e+00, 9.0834e-02, 1DIAGNOSTIC, 33, -9.371458289830e-01, 1.246223035399e-04, 4.4130e+00, 8.9540e-02, 1DIAGNOSTIC, 34, -9.378724334839e-01, 1.191056317648e-04, 4.5083e+00, 9.5354e-02, 1DIAGNOSTIC, 35, -9.385970494108e-01, 1.155659338688e-04, 4.6019e+00, 9.3579e-02, 1DIAGNOSTIC, 36, -9.390974769087e-01, 1.105910343602e-04, 4.6921e+00, 9.0197e-02, 1DIAGNOSTIC, 37, -9.395646728661e-01, 1.044682096679e-04, 4.7825e+00, 9.0434e-02, 1DIAGNOSTIC, 38, -9.398529769444e-01, 9.622669187852e-05, 4.8723e+00, 8.9778e-02, 1DIAGNOSTIC, 39, -9.401000999745e-01, 8.689560887290e-05, 4.9619e+00, 8.9611e-02, 1DIAGNOSTIC, 40, -9.406454033175e-01, 7.939573753743e-05, 5.0677e+00, 1.0577e-01, 1DIAGNOSTIC, 41, -9.408827260900e-01, 7.302894140324e-05, 5.1576e+00, 8.9950e-02, 1DIAGNOSTIC, 42, -9.417124662231e-01, 6.802071739887e-05, 5.2464e+00, 8.8764e-02, 1DIAGNOSTIC, 43, -9.422724096319e-01, 6.475322446127e-05, 5.3366e+00, 9.0166e-02, 1DIAGNOSTIC, 44, -9.428967494236e-01, 6.487278215571e-05, 5.4340e+00, 9.7419e-02, 1DIAGNOSTIC, 45, -9.431500372073e-01, 6.546636622703e-05, 5.5256e+00, 9.1574e-02, 1DIAGNOSTIC, 46, -9.432829682712e-01, 6.404426583830e-05, 5.6167e+00, 9.1165e-02, 1DIAGNOSTIC, 47, -9.437286850359e-01, 6.257671597111e-05, 5.7093e+00, 9.2572e-02, 1DIAGNOSTIC, 48, -9.441220949323e-01, 5.949802360179e-05, 5.8003e+00, 9.1033e-02, 1DIAGNOSTIC, 49, -9.440792399044e-01, 5.209257248607e-05, 5.8910e+00, 9.0699e-02, 1DIAGNOSTIC, 50, -9.446184196395e-01, 4.684314952914e-05, 5.9823e+00, 9.1305e-02, 1DIAGNOSTIC, 51, -9.448208357223e-01, 3.989758406092e-05, 6.0722e+00, 8.9887e-02, 1DIAGNOSTIC, 52, -9.449425303006e-01, 3.499841199643e-05, 6.1619e+00, 8.9718e-02, 1DIAGNOSTIC, 53, -9.451887213802e-01, 3.158495258319e-05, 6.2623e+00, 1.0031e-01, 1DIAGNOSTIC, 54, -9.455251438498e-01, 3.076947340690e-05, 6.3553e+00, 9.3001e-02, 1DIAGNOSTIC, 55, -9.459142459380e-01, 3.063583155860e-05, 6.4474e+00, 9.2152e-02, 1DIAGNOSTIC, 56, -9.460607778525e-01, 2.905526045675e-05, 6.5371e+00, 8.9710e-02, 1DIAGNOSTIC, 57, -9.462779506049e-01, 2.835709953651e-05, 6.6268e+00, 8.9638e-02, 1DIAGNOSTIC, 58, -9.464304888514e-01, 2.793531257534e-05, 6.7159e+00, 8.9141e-02, 1DIAGNOSTIC, 59, -9.467882952803e-01, 2.643601218027e-05, 6.8061e+00, 9.0238e-02, 1DIAGNOSTIC, 60, -9.470691594277e-01, 2.661520208028e-05, 6.8970e+00, 9.0890e-02, 1DIAGNOSTIC, 61, -9.471082430272e-01, 2.548752853027e-05, 6.9884e+00, 9.1348e-02, 1DIAGNOSTIC, 62, -9.472123176752e-01, 2.314335177634e-05, 7.1001e+00, 1.1173e-01, 1DIAGNOSTIC, 63, -9.473569132485e-01, 2.057068060619e-05, 7.1908e+00, 9.0748e-02, 1DIAGNOSTIC, 64, -9.477068816321e-01, 1.935435415486e-05, 7.2834e+00, 9.2523e-02, 1DIAGNOSTIC, 65, -9.476982384961e-01, 1.809533003139e-05, 7.3790e+00, 9.5670e-02, 1DIAGNOSTIC, 66, -9.483419696629e-01, 1.886891842291e-05, 7.5032e+00, 1.2417e-01, 1DIAGNOSTIC, 67, -9.483808115042e-01, 1.896742161337e-05, 7.6266e+00, 1.2338e-01, 1DIAGNOSTIC, 68, -9.482678494959e-01, 1.744251569308e-05, 7.7176e+00, 9.1000e-02, 1DIAGNOSTIC, 69, -9.487703675108e-01, 1.814383609645e-05, 7.8077e+00, 9.0117e-02, 1DIAGNOSTIC, 70, -9.487238975137e-01, 1.807286177614e-05, 7.8980e+00, 9.0320e-02, 1DIAGNOSTIC, 71, -9.490684076081e-01, 1.795099816727e-05, 7.9868e+00, 8.8749e-02, 1DIAGNOSTIC, 72, -9.491312726659e-01, 1.683216713389e-05, 8.0765e+00, 8.9712e-02, 1DIAGNOSTIC, 73, -9.490622177691e-01, 1.448784299760e-05, 8.1663e+00, 8.9822e-02, 1DIAGNOSTIC, 74, -9.496404411941e-01, 1.471630184254e-05, 8.2560e+00, 8.9656e-02, 1DIAGNOSTIC, 75, -9.493546952220e-01, 1.220723422666e-05, 8.3453e+00, 8.9357e-02, 1DIAGNOSTIC, 76, -9.497774435059e-01, 1.296232933624e-05, 8.4358e+00, 9.0450e-02, 1DIAGNOSTIC, 77, -9.498886496402e-01, 1.308266486712e-05, 8.5256e+00, 8.9788e-02, 1DIAGNOSTIC, 78, -9.499096817441e-01, 1.156622091710e-05, 8.6360e+00, 1.1047e-01, 1DIAGNOSTIC, 79, -9.504749144941e-01, 1.315140900912e-05, 8.7268e+00, 9.0788e-02, 1DIAGNOSTIC, 80, -9.506323065413e-01, 1.379933660540e-05, 8.8177e+00, 9.0915e-02, 1DIAGNOSTIC, 81, -9.506087527890e-01, 1.435494770583e-05, 8.9093e+00, 9.1543e-02, 1DIAGNOSTIC, 82, -9.510760323580e-01, 1.556315144684e-05, 8.9986e+00, 8.9338e-02, 1DIAGNOSTIC, 83, -9.508217361514e-01, 1.399121408178e-05, 9.0906e+00, 9.1995e-02, 1DIAGNOSTIC, 84, -9.507524767457e-01, 1.304990862568e-05, 9.1811e+00, 9.0464e-02, 1DIAGNOSTIC, 85, -9.510971200396e-01, 1.108712431789e-05, 9.2708e+00, 8.9753e-02, 1DIAGNOSTIC, 86, -9.512421432638e-01, 1.010678529039e-05, 9.3607e+00, 8.9905e-02, 1DIAGNOSTIC, 87, -9.513009627919e-01, 8.805887961965e-06, 9.4649e+00, 1.0422e-01, 1DIAGNOSTIC, 88, -9.514149923061e-01, 7.164755637079e-06, 9.5547e+00, 8.9705e-02, 1DIAGNOSTIC, 89, -9.516633976884e-01, 7.694535302314e-06, 9.6457e+00, 9.1006e-02, 1DIAGNOSTIC, 90, -9.517382978857e-01, 8.258344339604e-06, 9.7366e+00, 9.0967e-02, 1DIAGNOSTIC, 91, -9.516690714668e-01, 7.672846813862e-06, 9.8272e+00, 9.0550e-02, 1DIAGNOSTIC, 92, -9.517304389849e-01, 8.194361509553e-06, 9.9182e+00, 9.0996e-02, 1DIAGNOSTIC, 93, -9.516130814360e-01, 6.745214297719e-06, 1.0008e+01, 8.9814e-02, 1DIAGNOSTIC, 94, -9.522240682610e-01, 6.428983267208e-06, 1.0098e+01, 9.0218e-02, 1DIAGNOSTIC, 95, -9.517607103411e-01, 5.082958338041e-06, 1.0215e+01, 1.1641e-01, 1DIAGNOSTIC, 96, -9.521569097758e-01, 5.090846604281e-06, 1.0319e+01, 1.0437e-01, 1DIAGNOSTIC, 97, -9.520802886702e-01, 4.562920767131e-06, 1.0446e+01, 1.2727e-01, 1DIAGNOSTIC, 98, -9.520108257756e-01, 3.748242081582e-06, 1.0542e+01, 9.5307e-02, 1DIAGNOSTIC, 99, -9.521538487327e-01, 3.811078347203e-06, 1.0638e+01, 9.6245e-02, 1DIAGNOSTIC, 100, -9.523552019035e-01, 4.369208424155e-06, 1.0733e+01, 9.5264e-02, XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -8.766166549361e-01, 1.797693134862e+308, 1.2761e+01, 2.0278e+00, 1DIAGNOSTIC, 2, -8.834907417247e-01, 1.797693134862e+308, 1.3306e+01, 5.4502e-01, 1DIAGNOSTIC, 3, -8.909120354467e-01, 1.797693134862e+308, 1.3835e+01, 5.2883e-01, 1DIAGNOSTIC, 4, -8.972588183516e-01, 1.797693134862e+308, 1.4358e+01, 5.2308e-01, 1DIAGNOSTIC, 5, -9.025054939041e-01, 1.797693134862e+308, 1.4875e+01, 5.1709e-01, 1DIAGNOSTIC, 6, -9.071265130078e-01, 1.797693134862e+308, 1.5398e+01, 5.2296e-01, 1DIAGNOSTIC, 7, -9.113929295444e-01, 1.797693134862e+308, 1.5923e+01, 5.2550e-01, 1DIAGNOSTIC, 8, -9.147276283405e-01, 1.797693134862e+308, 1.6433e+01, 5.0921e-01, 1DIAGNOSTIC, 9, -9.177212719801e-01, 1.797693134862e+308, 1.6945e+01, 5.1210e-01, 1DIAGNOSTIC, 10, -9.208013722882e-01, 3.095591157444e-03, 1.7483e+01, 5.3847e-01, 1DIAGNOSTIC, 11, -9.237856651688e-01, 2.494128221927e-03, 1.8034e+01, 5.5060e-01, 1DIAGNOSTIC, 12, -9.262384785840e-01, 2.011355749404e-03, 1.8557e+01, 5.2337e-01, 1DIAGNOSTIC, 13, -9.281964855796e-01, 1.646309384872e-03, 1.9093e+01, 5.3558e-01, 1DIAGNOSTIC, 14, -9.300345270259e-01, 1.366253739482e-03, 1.9645e+01, 5.5186e-01, 1DIAGNOSTIC, 15, -9.317640535890e-01, 1.143116330295e-03, 2.0197e+01, 5.5249e-01, 1DIAGNOSTIC, 16, -9.330398139456e-01, 9.567978988762e-04, 2.0734e+01, 5.3708e-01, 1DIAGNOSTIC, 17, -9.342937941727e-01, 8.050540776625e-04, 2.1273e+01, 5.3919e-01, 1DIAGNOSTIC, 18, -9.356827655535e-01, 6.771973534136e-04, 2.1813e+01, 5.4008e-01, 1DIAGNOSTIC, 19, -9.370931534006e-01, 5.714647539372e-04, 2.2362e+01, 5.4873e-01, 1DIAGNOSTIC, 20, -9.385002569153e-01, 4.920976409169e-04, 2.2905e+01, 5.4330e-01, 1DIAGNOSTIC, 21, -9.393962629388e-01, 4.312589643690e-04, 2.3444e+01, 5.3822e-01, 1DIAGNOSTIC, 22, -9.402931223144e-01, 3.827406231920e-04, 2.3983e+01, 5.3944e-01, 1DIAGNOSTIC, 23, -9.410813931924e-01, 3.392801257946e-04, 2.4543e+01, 5.5975e-01, 1DIAGNOSTIC, 24, -9.419605784409e-01, 3.022244489143e-04, 2.5108e+01, 5.6537e-01, 1DIAGNOSTIC, 25, -9.430054468068e-01, 2.737753176668e-04, 2.5659e+01, 5.5068e-01, 1DIAGNOSTIC, 26, -9.437576912845e-01, 2.456628523470e-04, 2.6220e+01, 5.6067e-01, 1DIAGNOSTIC, 27, -9.446659883560e-01, 2.211321837393e-04, 2.6771e+01, 5.5124e-01, 1DIAGNOSTIC, 28, -9.454634641667e-01, 2.013543740026e-04, 2.7324e+01, 5.5333e-01, 1DIAGNOSTIC, 29, -9.462364335742e-01, 1.868205250169e-04, 2.7861e+01, 5.3646e-01, 1DIAGNOSTIC, 30, -9.468394205506e-01, 1.760569588794e-04, 2.8401e+01, 5.4009e-01, 1DIAGNOSTIC, 31, -9.474775708931e-01, 1.644630655952e-04, 2.8944e+01, 5.4294e-01, 1DIAGNOSTIC, 32, -9.481140811795e-01, 1.526820474647e-04, 2.9497e+01, 5.5393e-01, 1DIAGNOSTIC, 33, -9.485347035640e-01, 1.382811851308e-04, 3.0036e+01, 5.3871e-01, 1DIAGNOSTIC, 34, -9.491071348415e-01, 1.246216429252e-04, 3.0604e+01, 5.6755e-01, 1DIAGNOSTIC, 35, -9.496133926554e-01, 1.134493852253e-04, 3.1142e+01, 5.3820e-01, 1DIAGNOSTIC, 36, -9.501646760934e-01, 1.031157211820e-04, 3.1694e+01, 5.5223e-01, 1DIAGNOSTIC, 37, -9.506848599241e-01, 9.527016140922e-05, 3.2244e+01, 5.5005e-01, 1DIAGNOSTIC, 38, -9.512511351429e-01, 8.968918120748e-05, 3.2796e+01, 5.5225e-01, 1DIAGNOSTIC, 39, -9.517662383948e-01, 8.591267104028e-05, 3.3348e+01, 5.5143e-01, 1DIAGNOSTIC, 40, -9.522146777380e-01, 8.211395000633e-05, 3.3899e+01, 5.5119e-01, 1DIAGNOSTIC, 41, -9.525608848908e-01, 7.796106330716e-05, 3.4453e+01, 5.5348e-01, 1DIAGNOSTIC, 42, -9.529352443196e-01, 7.393431909992e-05, 3.4996e+01, 5.4369e-01, 1DIAGNOSTIC, 43, -9.533944716731e-01, 6.924355832055e-05, 3.5549e+01, 5.5305e-01, 1DIAGNOSTIC, 44, -9.538746253681e-01, 6.540433006314e-05, 3.6100e+01, 5.5055e-01, 1DIAGNOSTIC, 45, -9.542441295563e-01, 6.138823902275e-05, 3.6639e+01, 5.3909e-01, 1DIAGNOSTIC, 46, -9.546629435372e-01, 5.812096247019e-05, 3.7191e+01, 5.5169e-01, 1DIAGNOSTIC, 47, -9.550112399074e-01, 5.504126072002e-05, 3.7740e+01, 5.4929e-01, 1DIAGNOSTIC, 48, -9.553394823190e-01, 5.246454112409e-05, 3.8291e+01, 5.5067e-01, 1DIAGNOSTIC, 49, -9.557168837397e-01, 5.049028979549e-05, 3.8841e+01, 5.5081e-01, 1DIAGNOSTIC, 50, -9.560372377855e-01, 4.843615534082e-05, 3.9380e+01, 5.3890e-01, 1DIAGNOSTIC, 51, -9.562339750402e-01, 4.507530309621e-05, 3.9925e+01, 5.4425e-01, 1DIAGNOSTIC, 52, -9.564838541494e-01, 4.119244940787e-05, 4.0499e+01, 5.7420e-01, 1DIAGNOSTIC, 53, -9.567998357430e-01, 3.794233153459e-05, 4.1044e+01, 5.4530e-01, 1DIAGNOSTIC, 54, -9.569209969712e-01, 3.454257253985e-05, 4.1596e+01, 5.5171e-01, 1DIAGNOSTIC, 55, -9.572472487989e-01, 3.181150238073e-05, 4.2148e+01, 5.5192e-01, 1DIAGNOSTIC, 56, -9.574886812200e-01, 2.970817033233e-05, 4.2701e+01, 5.5363e-01, 1DIAGNOSTIC, 57, -9.578140885705e-01, 2.842349695030e-05, 4.3240e+01, 5.3912e-01, 1DIAGNOSTIC, 58, -9.580438029841e-01, 2.735795494732e-05, 4.3786e+01, 5.4589e-01, 1DIAGNOSTIC, 59, -9.582483130340e-01, 2.670634694460e-05, 4.4338e+01, 5.5147e-01, 1DIAGNOSTIC, 60, -9.584803692815e-01, 2.633519195141e-05, 4.4890e+01, 5.5196e-01, 1DIAGNOSTIC, 61, -9.587023227509e-01, 2.552901205238e-05, 4.5454e+01, 5.6406e-01, 1DIAGNOSTIC, 62, -9.589766512387e-01, 2.485182624793e-05, 4.6006e+01, 5.5170e-01, 1DIAGNOSTIC, 63, -9.590302701376e-01, 2.361397372561e-05, 4.6559e+01, 5.5298e-01, 1DIAGNOSTIC, 64, -9.593618563494e-01, 2.232398657087e-05, 4.7112e+01, 5.5316e-01, 1DIAGNOSTIC, 65, -9.593953152291e-01, 2.060224603887e-05, 4.7665e+01, 5.5329e-01, 1DIAGNOSTIC, 66, -9.596468120149e-01, 1.922908003960e-05, 4.8205e+01, 5.4053e-01, 1DIAGNOSTIC, 67, -9.598303720342e-01, 1.835161161194e-05, 4.8791e+01, 5.8518e-01, 1DIAGNOSTIC, 68, -9.600034805096e-01, 1.754671347318e-05, 4.9341e+01, 5.5074e-01, 1DIAGNOSTIC, 69, -9.600956826260e-01, 1.639956648033e-05, 4.9887e+01, 5.4566e-01, 1DIAGNOSTIC, 70, -9.603367067491e-01, 1.577703642558e-05, 5.0425e+01, 5.3791e-01, XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -8.612681066539e-01, 1.797693134862e+308, 5.6054e+01, 5.6293e+00, 1DIAGNOSTIC, 2, -8.638959234509e-01, 1.797693134862e+308, 5.9725e+01, 3.6712e+00, 1DIAGNOSTIC, 3, -8.672190340766e-01, 1.797693134862e+308, 6.3316e+01, 3.5907e+00, 1DIAGNOSTIC, 4, -8.701297027998e-01, 1.797693134862e+308, 6.6837e+01, 3.5210e+00, 1DIAGNOSTIC, 5, -8.727698312613e-01, 1.797693134862e+308, 7.0436e+01, 3.5993e+00, 1DIAGNOSTIC, 6, -8.751996854597e-01, 1.797693134862e+308, 7.3945e+01, 3.5081e+00, 1DIAGNOSTIC, 7, -8.774389791025e-01, 1.797693134862e+308, 7.7552e+01, 3.6073e+00, 1DIAGNOSTIC, 8, -8.795601435463e-01, 1.797693134862e+308, 8.1072e+01, 3.5201e+00, 1DIAGNOSTIC, 9, -8.814828215213e-01, 1.797693134862e+308, 8.4532e+01, 3.4601e+00, 1DIAGNOSTIC, 10, -8.832598218323e-01, 1.625152249332e-03, 8.8119e+01, 3.5867e+00, 1DIAGNOSTIC, 11, -8.849502928275e-01, 1.379410579229e-03, 9.1951e+01, 3.8323e+00, 1DIAGNOSTIC, 12, -8.863467844847e-01, 1.158707273396e-03, 9.5623e+01, 3.6724e+00, 1DIAGNOSTIC, 13, -8.874894699823e-01, 9.780624631032e-04, 9.9287e+01, 3.6640e+00, 1DIAGNOSTIC, 14, -8.885747391724e-01, 8.263731264974e-04, 1.0310e+02, 3.8164e+00, 1DIAGNOSTIC, 15, -8.896155383461e-01, 6.983811445080e-04, 1.0698e+02, 3.8756e+00, 1DIAGNOSTIC, 16, -8.906175158595e-01, 5.912025980027e-04, 1.1077e+02, 3.7954e+00, 1DIAGNOSTIC, 17, -8.915667682181e-01, 5.023918693520e-04, 1.1446e+02, 3.6816e+00, 1DIAGNOSTIC, 18, -8.924494849970e-01, 4.306486476437e-04, 1.1812e+02, 3.6645e+00, 1DIAGNOSTIC, 19, -8.932748419925e-01, 3.729519212310e-04, 1.2190e+02, 3.7780e+00, 1DIAGNOSTIC, 20, -8.940560611662e-01, 3.272730155618e-04, 1.2564e+02, 3.7447e+00, 1DIAGNOSTIC, 21, -8.948006917497e-01, 2.925573239187e-04, 1.2940e+02, 3.7542e+00, 1DIAGNOSTIC, 22, -8.955012808791e-01, 2.642104491872e-04, 1.3318e+02, 3.7826e+00, 1DIAGNOSTIC, 23, -8.961970712452e-01, 2.391946618151e-04, 1.3701e+02, 3.8329e+00, 1DIAGNOSTIC, 24, -8.968700747574e-01, 2.172724326163e-04, 1.4063e+02, 3.6118e+00, 1DIAGNOSTIC, 25, -8.975017137524e-01, 1.980795967423e-04, 1.4436e+02, 3.7342e+00, 1DIAGNOSTIC, 26, -8.980965316338e-01, 1.813587712898e-04, 1.4805e+02, 3.6920e+00, 1DIAGNOSTIC, 27, -8.986831746819e-01, 1.669738814132e-04, 1.5201e+02, 3.9574e+00, 1DIAGNOSTIC, 28, -8.992252895665e-01, 1.541131005198e-04, 1.5568e+02, 3.6747e+00, 1DIAGNOSTIC, 29, -8.997689144991e-01, 1.426562866366e-04, 1.5938e+02, 3.6928e+00, 1DIAGNOSTIC, 30, -9.002428585255e-01, 1.318263319391e-04, 1.6311e+02, 3.7382e+00, 1DIAGNOSTIC, 31, -9.007375115992e-01, 1.219963754064e-04, 1.6691e+02, 3.7989e+00, 1DIAGNOSTIC, 32, -9.011863290206e-01, 1.126773959610e-04, 1.7052e+02, 3.6044e+00, 1DIAGNOSTIC, 33, -9.016451488733e-01, 1.043970900119e-04, 1.7428e+02, 3.7634e+00, 1DIAGNOSTIC, 34, -9.020785213759e-01, 9.707093829395e-05, 1.7789e+02, 3.6058e+00, 1DIAGNOSTIC, 35, -9.024655693161e-01, 9.022830806962e-05, 1.8168e+02, 3.7970e+00, 1DIAGNOSTIC, 36, -9.028373283458e-01, 8.375770453501e-05, 1.8530e+02, 3.6126e+00, 1DIAGNOSTIC, 37, -9.031953080006e-01, 7.781524169687e-05, 1.8902e+02, 3.7275e+00, 1DIAGNOSTIC, 38, -9.035493016626e-01, 7.228987028418e-05, 1.9285e+02, 3.8238e+00, 1DIAGNOSTIC, 39, -9.038869712394e-01, 6.737086532679e-05, 1.9659e+02, 3.7376e+00, 1DIAGNOSTIC, 40, -9.042308986401e-01, 6.279712614010e-05, 2.0029e+02, 3.7094e+00, 1DIAGNOSTIC, 41, -9.045193462345e-01, 5.855432077792e-05, 2.0410e+02, 3.8060e+00, 1DIAGNOSTIC, 42, -9.048365568544e-01, 5.474821455367e-05, 2.0779e+02, 3.6912e+00, 1DIAGNOSTIC, 43, -9.051437639334e-01, 5.156685757195e-05, 2.1156e+02, 3.7654e+00, 1DIAGNOSTIC, 44, -9.054260747574e-01, 4.878980935761e-05, 2.1529e+02, 3.7287e+00, 1DIAGNOSTIC, 45, -9.057030700983e-01, 4.618628224453e-05, 2.1898e+02, 3.6981e+00, 1DIAGNOSTIC, 46, -9.059721629173e-01, 4.373213569231e-05, 2.2265e+02, 3.6692e+00, 1DIAGNOSTIC, 47, -9.062191344473e-01, 4.130891037291e-05, 2.2648e+02, 3.8310e+00, 1DIAGNOSTIC, 48, -9.065110954098e-01, 3.932966316791e-05, 2.3010e+02, 3.6190e+00, 1DIAGNOSTIC, 49, -9.067423857343e-01, 3.736282529810e-05, 2.3391e+02, 3.8068e+00, 1DIAGNOSTIC, 50, -9.070037888985e-01, 3.577420897650e-05, 2.3782e+02, 3.9118e+00, Elapsed time (stage 2): 242.7

Total elapsed time: 301

Apply linear transform to T1 antsApplyTransforms -d 3 -i /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.2rM5DDNdfq/ANTS0GenericAffine.mat -o /tmp/tmp.2rM5DDNdfq/T1_norm_lin_atlas_2_5.nii.gz

Apply linear transform to distorted b0 antsApplyTransforms -d 3 -i /INPUTS/b0.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.2rM5DDNdfq/ANTS0GenericAffine.mat -t /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt -o /tmp/tmp.2rM5DDNdfq/b0_d_lin_atlas_2_5.nii.gz Transform file does not exist: /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt

Apply nonlinear transform to T1 antsApplyTransforms -d 3 -i /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.2rM5DDNdfq/ANTS1Warp.nii.gz -t /tmp/tmp.2rM5DDNdfq/ANTS0GenericAffine.mat -o /tmp/tmp.2rM5DDNdfq/T1_norm_nonlin_atlas_2_5.nii.gz

Apply nonlinear transform to distorted b0 antsApplyTransforms -d 3 -i /INPUTS/b0.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.2rM5DDNdfq/ANTS1Warp.nii.gz -t /tmp/tmp.2rM5DDNdfq/ANTS0GenericAffine.mat -t /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt -o /tmp/tmp.2rM5DDNdfq/b0_d_nonlin_atlas_2_5.nii.gz Transform file does not exist: /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt

Copying results to results path... cp: cannot stat '/tmp/tmp.2rM5DDNdfq/epi_reg_d.mat': No such file or directory cp: cannot stat '/tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt': No such file or directory cp: cannot stat '/tmp/tmp.2rM5DDNdfq/b0_d_lin_atlas_2_5.nii.gz': No such file or directory cp: cannot stat '/tmp/tmp.2rM5DDNdfq/b0_d_nonlin_atlas_2_5.nii.gz': No such file or directory

Removing job directory... Performing inference on FOLD: 1 T1 input path: /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz b0 input path: /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz b0 output path: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_1.nii.gz Model path: /extra/dual_channel_unet/num_fold_1_total_folds_5_seed_1_num_epochs_100_lr_0.0001_betas_(0.9, 0.999)_weight_decay_1e-05_num_epoch_97.pth Traceback (most recent call last): File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 40, in load stat_result = os.stat(filename) FileNotFoundError: [Errno 2] No such file or directory: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/extra/inference.py", line 90, in img_model = inference(T1_input_path, b0_input_path, model, device) File "/extra/inference.py", line 32, in inference img_b0_d = np.expand_dims(util.get_nii_img(b0_d_path), axis=3) File "/extra/util.py", line 24, in get_nii_img nii = nib.load(path_nii) File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 42, in load raise FileNotFoundError("No such file or no access: '%s'" % filename) FileNotFoundError: No such file or no access: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz' Taking ensemble average Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_* terminate called after throwing an instance of 'std::runtime_error' what(): No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_* /extra/pipeline.sh: line 34: 1479 Aborted (core dumped) fslmerge -t /OUTPUTS/b0_u_lin_atlas_2_5_merged.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_*.nii.gz Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_merged terminate called after throwing an instance of 'std::runtime_error' what(): No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_merged /extra/pipeline.sh: line 35: 1480 Aborted (core dumped) fslmaths /OUTPUTS/b0_u_lin_atlas_2_5_merged.nii.gz -Tmean /OUTPUTS/b0_u_lin_atlas_2_5.nii.gz Applying inverse xform to undistorted b0 file /OUTPUTS/b0_u_lin_atlas_2_5.nii.gz does not exist . Transform file does not exist: /OUTPUTS/epi_reg_d_ANTS.txt Applying slight smoothing to distorted b0 Running topup Image Exception : #63 :: No image files match: /OUTPUTS/b0_u terminate called after throwing an instance of 'std::runtime_error' what(): No image files match: /OUTPUTS/b0_u /extra/pipeline.sh: line 47: 1487 Aborted (core dumped) fslmerge -t /OUTPUTS/b0_all.nii.gz /OUTPUTS/b0_d_smooth.nii.gz /OUTPUTS/b0_u.nii.gz Image Exception : #63 :: No image files match: /OUTPUTS/b0_all Image Exception : #22 :: Failed to read volume /OUTPUTS/b0_all.nii.gz Error : No image files match: /OUTPUTS/b0_all

Part of FSL (ID: 6.0.1) topup

Usage: topup --imain=<some 4D image> --datain= --config= --out=my_topup_results

Compulsory arguments (You MUST set one or more of): --imain name of 4D file with images --datain name of text file with PE directions/times

Failed to read volume /OUTPUTS/b0_all.nii.gz Error : No image files match: /OUTPUTS/b0_all FINISHED!!!

Sep 05 '21 14:09 Meryam1985

did you resolve the "Image Exception : #63"?

Feb 15 '22 18:02 ahilderley

Synb0-DISCO Synb0-DISCO copied to clipboard

"Image Exception : #63

INPUTS: Distorted b0 path: /INPUTS/b0.nii.gz T1 path: /INPUTS/T1.nii.gz T1 atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz T1 2.5 iso atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz Results path: /OUTPUTS

Job directory path: /tmp/tmp.hh0vCEw4zT

Making results directory...

Normalizing T1 normalize_T1.sh /INPUTS/T1.nii.gz /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz

INPUTS: T1 path: /INPUTS/T1.nii.gz T1 N3 path: /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz T1 normalized path: /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz

Job directory path: /tmp/tmp.MLt16FY2Ij

Sun Sep 5 13:49:03 UTC 2021 mri_nu_correct.mni done

Iterating 2 times

3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 70 (70), valley at 41 (41) csf peak at 36, setting threshold to 58 building Voronoi diagram... performing soap bubble smoothing, sigma = 8...

Removing job directory...

Skull stripping T1 bet /INPUTS/T1.nii.gz /tmp/tmp.hh0vCEw4zT/T1_mask.nii.gz -R

converting FSL transform to ANTS transform c3d_affine_tool -ref /INPUTS/T1.nii.gz -src /INPUTS/b0.nii.gz /tmp/tmp.hh0vCEw4zT/epi_reg_d.mat -fsl2ras -oitk /tmp/tmp.hh0vCEw4zT/epi_reg_d_ANTS.txt

Mapping parameters

antsRegistration call:

All_Command_lines_OK Using double precision for computations.

Total elapsed time: 309.7

Apply linear transform to T1 antsApplyTransforms -d 3 -i /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.hh0vCEw4zT/ANTS0GenericAffine.mat -o /tmp/tmp.hh0vCEw4zT/T1_norm_lin_atlas_2_5.nii.gz

Apply linear transform to distorted b0 antsApplyTransforms -d 3 -i /INPUTS/b0.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.hh0vCEw4zT/ANTS0GenericAffine.mat -t /tmp/tmp.hh0vCEw4zT/epi_reg_d_ANTS.txt -o /tmp/tmp.hh0vCEw4zT/b0_d_lin_atlas_2_5.nii.gz

Copying results to results path...

INPUTS: Distorted b0 path: /INPUTS/b0.nii.gz T1 path: /INPUTS/T1.nii.gz T1 atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz T1 2.5 iso atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz Results path: /OUTPUTS

Job directory path: /tmp/tmp.2rM5DDNdfq

Making results directory...

Normalizing T1 normalize_T1.sh /INPUTS/T1.nii.gz /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz

INPUTS: T1 path: /INPUTS/T1.nii.gz T1 N3 path: /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz T1 normalized path: /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz

Job directory path: /tmp/tmp.fF9M9wgwDa

Fri Sep 3 15:52:24 UTC 2021 mri_nu_correct.mni done

Iterating 2 times

3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 90 gm peak at 72 (72), valley at 55 (55) csf peak at 38, setting threshold to 60 building Voronoi diagram... performing soap bubble smoothing, sigma = 8...

Removing job directory...

Skull stripping T1 bet /INPUTS/T1.nii.gz /tmp/tmp.2rM5DDNdfq/T1_mask.nii.gz -R

converting FSL transform to ANTS transform c3d_affine_tool -ref /INPUTS/T1.nii.gz -src /INPUTS/b0.nii.gz /tmp/tmp.2rM5DDNdfq/epi_reg_d.mat -fsl2ras -oitk /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt terminate called after throwing an instance of 'char const*'

Mapping parameters

antsRegistration call:

All_Command_lines_OK Using double precision for computations.

Total elapsed time: 301

Apply linear transform to T1 antsApplyTransforms -d 3 -i /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.2rM5DDNdfq/ANTS0GenericAffine.mat -o /tmp/tmp.2rM5DDNdfq/T1_norm_lin_atlas_2_5.nii.gz

Synb0-DISCO
Synb0-DISCO copied to clipboard