Synb0-DISCO
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MASILab
Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
Hello! I would like to add your code to my DWI processing pipeline (qsiprep.readthedocs.io) but need to know what license this code/data is released under and how to credit the...
Hi @schillkg, I'm hoping you can help me out. I'm processing a large dataset where most of the individuals and sessions do not have a reverse-phase encoded diffusion acquisition. Synb0-DISCO...
Hi there, This may be an EDDY issue rather than Synb0-DISCO issue, but wanted to check whether there would be a Synb-DISCO reason for this. Including the topup outputs from...
Hi there, Thank you very much for creating and sharing this amazing tool. I am having issues with susceptibility distortion corrections in the brainstem. I generated the synthetic b0-file (see...
To whom it may concern: I am using a syn0-disco v. 3.0 image and am getting a recurrent crash in which the program appears to be looking for python3.6 to...
Could you please add a thread count parameter which is passed through to antsRegistrationSyNQuick.sh and topup in the singularity container? Thanks in advance.
I've found that when running the Singularity container version of the DISCO pipeline, we needed 32 GB of memory for our Sun Grid Engine to run the pipeline. I made...
``` epi_reg distorted b0 to T1 epi_reg --epi=/INPUTS/b0.nii.gz --t1=/INPUTS/T1.nii.gz --t1brain=/tmp/tmp.z3zFpgMgdl/T1_mask.nii.gz --out=/tmp/tmp.z3zFpgMgdl/epi_reg_d Running FAST segmentation FLIRT pre-alignment Running BBR ``` Shouldn't this step use GPU? `nvidia-smi` command does not print an...
Hello, I know this is not a bug, but I would like to ask if any developer could kindly weigh in on some considerations for synb0-DISCO implementation in DIPY on...
Hi there, We tried to get Synb0-DISCO run using docker and got an error message (see at the bottom of the email). The script pipeline.sh uses the files /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch*.pth...
