Jacques Dainat
Remove dependencies used by annosine2: - bedtools - hmmer - irfinder - matplotlib-base - minimap2 - nodejs - seqtk Add dependencies: - pyarrow - r-base - r-dplyr - r-ggplot2 -...
Here a suggestion for improvement of the readme. * add badge and link to install via bioconda * add badge and link to access the doc (https://lh3.github.io/minigraph/) * add license...
`is_ter_codon` and `is_start_codon` do not behaves the same. ( with that PR now it does). is_ter_codon was not verifying all unambiguous_codons, but only the first. I do not get why...
Fix bugs in codon table: * table 0 was not selectable via `Bio::Tools::CodonTable->new( -id => 0);` but was working only by creating a codon table by default and using the...
Hi, I would like to package your tool into bioconda. I would prefer to use a release. Could you make a proper GitHub release? Thank you, Best regards
It is now implemented so that BUSCO always analyses reference with mode 'genome', because otherwise BUSCO genes will not be returned.
In such case, we will not need the reference file.
The output of the inferring script is a bit barebones. Some more logging could be added to give more insight into how it's progressing.