Jacques Dainat
Manfred has developed something based on Kmers. We just have to use a chloroplast and mito DBs to start. We have to find where the tool is... @grabherr ?
When reading such feature: `chr10p ambMex60DD gene 313039 315424 1000 + . gene_id "AMEX60DD000001"; gene_name "ZFP37 [nr]|ZNF568 [hs]"; ` with GFF parser set to 2 or 2.5 it creates this...
…one. The others are saved in agat_other_gene_id
Add spkeeplongestisoform module for AGAT as asked in #7892 ## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). - [x] If you've fixed...
Still some issue after merging with master that had many commit out of this branch. bin/agat_sp_add_start_and_stop.pl bin/agat_sp_complement_annotations.pl bin/agat_sp_flag_short_introns_ebi.pl bin/agat_sp_merge_annotations.pl ...
Update/fix gass_fasta_purify When header are too long tools like BRAKER use all the header line as identifier and crash because too long. Must clean the header and keep only the...
This file is wrong [test-datasets](https://github.com/nf-core/test-datasets/tree/modules)/[data](https://github.com/nf-core/test-datasets/tree/modules/data)/[genomics](https://github.com/nf-core/test-datasets/tree/modules/data/genomics)/[homo_sapiens](https://github.com/nf-core/test-datasets/tree/modules/data/genomics/homo_sapiens)/[genome](https://github.com/nf-core/test-datasets/tree/modules/data/genomics/homo_sapiens/genome) /genome.gff3 GFF3 must contain 9 columns, almost all biological regions are wrong and contain between 10 and 11 columns