Jacques Dainat
Travis is too limited. We have only few build per month and in many case the CI tests are not run, Would be nice to move on to github actions....
We found a problem in the gff file you have as test. * rnaseq * test-datasets/reference/genes.gff ``` I ensembl transcript 335 649 . + . ID=YAL069W;Parent=YAL069W;geneID=YAL069W;gene_biotype=protein_coding;gene_name=YAL069W;gene_source=ensembl;gene_version=1;p_id=P3634;transcript_biotype=protein_coding;transcript_source=ensembl;transcript_version=1;tss_id=TSS1129 I ensembl exon 335...
If l1 (e.g. gene) and l2 feature (e.g. mRNA) are missing for several CDS that must be collectively linked (one CDS several position in the EMBL file), the tool create...
We have a user who has used a huge GFF annotation of 3.34 GB. It took ~ 24h computation and apparently it has used more than 50 GB of memory......
mRNA with Short introns (
Apparently the perl recipes will soon move to conda-forge (see #36884) but I open the issue here because the recipe is still hanlded by bioconda. The recipe for perl-LWP::Protocol::https is...
Hi, thanks for this useful bot. I made many auto roles, when saved it displayed properly in the channel. But I realised I forgot one role so I edited the...
We can merge isoforms if identical. We can merge loci when overlapping. () Bu we do not have check to remove identical loci, if we do want to merge loci...
This PR creates a conda package for IPK, which is a program to compute phylo-k-mer indexes. Those will be exploited by other recipes, such as the recipe EPIK, which is...