JoFlossy

I am trying to color fold changes in volcano plots from alphastats using jupyter notebook. How can I do this? Any help will be appreciated.

How to generate matadata for Alphastats ( in Jupyter notebooks)

2

Could you please suggest how best to generate the matadata file for example from the proteinGroups file generated in MaxQuant or is there any other output of MaxQuant that can...

Gene column empty for analysis using GPF generated spectra library

5

Hi Vadim, I used a GPF generated spectra library in DIANN to analyse sample data making sure to check reannotate box for both the spectra generation step and the sample...

Unique Peptides only for Quant in FragPipe

3

Is there a way in FragPipe with DIA data and using DIA_specLib_Quant to specify unique peptide for quantification only - discounting the razor? Many thanks, John