Unique Peptides only for Quant in FragPipe

[JohnSuberu]

Is there a way in FragPipe with DIA data and using DIA_specLib_Quant to specify unique peptide for quantification only - discounting the razor?

Many thanks,

John

[fcyu]

You can filter the report.tsv file by cross-reference the peptide.tsv to get which peptides are unique.

Best,

Fengchao

[JohnSuberu]

Many thanks Fengchao - For future revisions, is there any consideration of having unique, razor+unique or razor only options (like in MaxQuant) when running a workflow in FragPipe?

[fcyu]

Yes, we will consider adding it for DIA quant report.

Best,

Fengchao