JiaoLaboratory

Assembled contig (centromere-region) is too large than expected with hifi reads by Hifiasm

4

**Dear hifiasm developer, I am using hifiasm to assembly the Centromere-region with hifi reads, while I get one contig much longer than expected, I mapped the hifi reads and ONT...

whether is normal hic contacts of two haplotypes ?

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Dear hifiasm develpoer; I have used hifiasm and hic data to generate two haplotype contigs, and then used 3DDNA generated chromosomal-level haplotypes for a diploit genome (2x =500M, het=0.6%) ;...

statistics of hic contacts in inter.txt looks abnormal

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**Are you sure this is an issue?** Github Issues is reserved for situations that require changes to the codebase. Questions, discussions, etc. should be posted to the forum: aidenlab.org/forum.html Dear...

Is background matrices necessary?

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hello, I want to run hint tl for other species , Is background matrices necessary ?

hicPlotMatrix "--region 1:10000000-50000000" option is abnormal

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