JiaoLaboratory

CRAQ is suitable for evaluating individual phased genomes, such as haplotype1 and haplotype2. Users can input all unbinned reads (all reads) into CRAQ. Compared to using binned reads, evaluating phased...

HI, Thank you very much for using CRAQ. In fact, CRAQ uses sequencing sequences to find clipping breakpoints. In the case of the “”--ser T” option, CRAQ will search the...

The result of out_final.CSE.bed and out_final.CRE.bed could descriped as: chrid error_start error_end error_breakpoint error_stype m17 22122332 22122333 m17:22122332 CSE for your result, error_start = error_end, it is normal, means there...


Are you sure have been upload CRAQ successfully ? Please check again! $ git clone https://github.com/JiaoLaboratory/CRAQ.git $ cd CRAQ $ perl bin/craq -h

Thank you very much for your support. . It seems that the long-read data you provided (lr.fq.gz) did not exact. You supplied long-read data, but CRAQ appears to have only...

Additionally, may I ask if your lr.fq.gz file actually exists? If you only have short-reads data, you can use the following command: 'craq -g assembly.fa -ngs SRR10382366_1.fastq, SRR10382366_2.fastq'.

Alright, Agnieszka. Additionally, I need to point out that if you want to verify errors in the genome, the two files "locER_out/out_final.CRE.bed " and "strER_out/out_final.CSE.bed" are more valuable, as they...

Hi, Agnieszka, Thanks, the documentation was update to avoid potential confusion. If you encounter the following issue : “[E::hts_idx_check_range] Region 631441106..631444822 cannot be stored in a bai index. Try using...

Sorry for my delay reply for my busy, it could be found from: "Li, K., Xu, P., Wang, J. et al. Identification of errors in draft genome assemblies at single-nucleotide...