interpretation of results

[Wanjie-Feng]

Hello, thanks for developing a very useful tool, I have a little doubt when I use this tool, I would like to ask you : My command is as follows :

perl  ./CRAQ/bin/craq -g chr.fasta -sms hifi.sorted.bam -pl T 

When I go to check the results after normal operation, I mainly focus on two files：out_final.CRE.bed and out_final.CSE.bed The result of out_final.CRE.bed is as follows:

m01	1	1	m01:1	CRE
m01	60253887	60253887	m01:60253887	CRE
m02	1	1	m02:1	CRE
m02	44039054	44039054	m02:44039054	CRE
m02	54796608	54796608	m02:54796608	CRE
m03	1	1	m03:1	CRE
m03	11057839	11057839	m03:11057839	CRE
m03	49202667	49202667	m03:49202667	CRE
m04	1	1	Gm04:1	CRE
m04	36798166	36798166	m04:36798166	CRE
m04	55614844	55614844	m04:55614844	CRE

The result of out_final.CSE.bed is as follows:

m08	15154	15155	m08:15154	CSE
m11	27340675	27340676	m11:27340675	CSE
m17	22122332	22122333	m17:22122332	CSE
m17	24023509	24023510	m17:24023509	CSE
m17	24032958	24032959	m17:24032958	CSE

I don 't understand why the area length of my bed file is 1 Hope to get help, thank you