Georges Kanaan comments

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                                            Georges Kanaan

Understanding output

So I think I figured out that the contigs get concatenated so a sliding window can work (though in the case of a MAG that doesn't really make sense). However,...

Unclear modkit pileup `--region`

Thanks, that's reasonable. I just used `--include-bed`

unable to run checm2 -h or download Diamond db, error in np.object

Downgrade numpy to 1.20.3