Georges Kanaan
Georges Kanaan
I confirmed this by doing `pip install scikit-learn==1.1.0` in my anvi'o environment. After that, `anvi-cluster-contigs` completes successfully.
Hi @Sabrin2020 can you confirm that it worked just by changing the scikit-learn version? i.e. if you upgrade scikit it works again?
I would open a separate issue with your error with steps to reproduce.
@meren may be useful to add a warning about this somewhere near the CONCOCT installation instructions on the website perhaps.
Sure, meant to be somewhere near the CONCOCT install instructions: > Users should not that they may encounter an error when running CONCOCT of type `TypeError`. Please see [here](https://github.com/merenlab/anvio/issues/2154) for...
Hi @mikolmogorov I was wondering if you've had a chance to build this in?
Hi @mikolmogorov I did benchmark this a while ago and if I recall correctly see a slight improvement on my data however it is a mean Q12 despite using the...
Same situation, wrongly suspended and would like to delete my comments.
When I use that index to download the DB, I then did `kraken2-build --download-taxonomy --db DB` and that was successful.
Hey @metehaansever I was wondering if this made it through to the dev version? I'm about to embark on another set of manual curation (aka FUN). No worries if not!