jbrowse-jupyter
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GMOD
A python package for showing JBrowse views
The anywidget platform is created by member of gosling @manzt https://blog.jupyter.org/anywidget-jupyter-widgets-made-easy-164eb2eae102 Would be interesting if jbrowse-jupyter could use...I think I mentioned it to @garrettjstevens and it could even bypass some...
dependent on https://github.com/GMOD/jbrowse-components/pull/4159 and https://github.com/GMOD/dash_jbrowse/pull/49 Relevant permissions in this repo, and dependent repos: Workflow permissions > read and write permissions Actions secrets > repository secrets > ACTIONS_KEY === github personal...
Request from @ihh "Is there any way we can control a jbrowse instance remotely after launching it [from Jupyter] - for example by having it listen on a websocket, or...
added notebook_scheme kwarg to jbrowse_config.set_env to enable https support instead of hardcoded http scheme in make_url_colab_jupyter in tracks.py
This would enable e.g. possibly synteny visualization, etc.
Some examples here https://github.com/scottcain/jbrowse-jupyter-examples from @scottcain
**Is your feature request related to a problem? Please describe.** A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] when creating a jbrowse...
It would be awesome to be able to not only accept local files, but except Python data objects, for example stuff from [biopython](https://biopython.org/), i.e. a parsed GFF, or one of...
We can currently create a config in two ways 1) create('view', genome='hg38') 2) create("config") or create("config", conf={bulk config}) We want to be able to create a view from a path...