Friederike Hanssen

Has there been any progress here? :)

Hi @bioPG ! Do you have internet access? I have run this on multiple machines and can't reproduce your error.

> > There is a doc section about what to expect from the tests, that would also need updating. > > We actually don't explain too much there, and I...

Hi @sabrina0701 ! Yes at the moment the bai must be added. I'll update the docs.

Hi @bounlu ! After reading the issue description again it occured to me that maybe the problem is that you are running from a different region than eu-west-1. However, I...

hm then it is not that. I'll ask around

Based on the `Task failed to start - DockerTimeoutError: Could not transition to created; timed out after waiting 4m0s` I am thinking it might not be Mutect2 specific but something...

BQSR would be done also with a Sentieon subtool or GATK?

carefully toying around with it, is the correct answer I would say.

So this issue is halfway addressed (see #606 ). It is possible now to use ASCAT with WES, however, we are currently not providing the necessary reference files: Reanme: Provide...