Friederike Hanssen

yes that is right

Do you remember what the plan was here? When supplying multiple input files to get one output MQC?

Hi! i looked into this a bit, looks like you need to create a `baseline` form public data beforehand. To ensure this is all in the right container and reproducible...

- [ ] Update module in nf-core/modules - [ ] vep.yml - [ ] strelka.yml - [ ] freebayes.yml - [ ] Clear up effGenomeSize computation - [ ] Update...

Hey! I started looking into this. I actually can't find the curie tool on anaconda.org. From the README I think, they provide an environment file to set up, in which...

❤️ thank you for adding this! As soon as biocontainers is there, I'll add the module.

@apeltzer started working on it. Module is in the making. For adding it to sarek, we need to add config files for each caller (except mutec2). and then also discuss...

> ``` > Caused by: > Process `test_picard_addorr--eplacereadgroups:PICARD_ADDORREPLACEREADGROUPS (test)` terminated with an error exit status (1) > > Command executed: > > picard \ > AddOrReplaceReadGroups \ > -Xmx3g \...

Yes looks good. However let's NOT merge until this is in: https://github.com/nf-core/modules/pull/2141/files (Major restructure of nf-core/modules to allow subworkflows in the future)

Sarek has some bam_postprocessing subworkflows based on GATk Best Practices that @maxulysse and me have been planning to add to subworkflows at some point. I think they would fit here:...