Florian Trigodet
Florian Trigodet
## The need I've been working with `anvi-interactive` in manual mode with a matrix of data that includes some NA/null values. The problem is that in the interactive interface, the...
## The need  ## The solution Make `anvi-script-kofam-accessions-to-hmms-directory`. Or make `anvi-script-accessions-to-hmms-directory` with an option for `pfam` or `kofam`.
## Short description of the problem When using `anvi-split` with a collection of only one split, the split contigs.db should only contains the sequence for that split. But instead, it...
Using the master version. I have noticed that the normalisation (to log or square root) of the layers misc data is not properly working. It changes the scale right, but...
Hello everyone and welcome for our new and final episode of the newick tree branch support value problem! # Background The problem: when rooting a tree, some branch support values...
## Short description of the problem When using anvi-inspect, we cannot visualize SNVs. ## anvi'o version anvio-dev ## Detailed description of the issue If you open an inspect page with...
## Short description of the problem In the interactive interface, we can search for items matching an operator formula. And it does not work with large numbers somewhat. ## anvi'o...
## The need A better `anvi-script-gen-short-reads` to generate more realistic short-reads from longer sequence. I want to turn long-read metagenomes into short-reads metagenomes. ## The solution Currently `anvi-script-gen-short-reads` requires a...
## The need I would like to search for palindromes using the ambiguous DNA code. Like that: ``` anvi-search-palindromes --dna-sequence WWAGTNNCCNTTNNNNNNNNAANGGNNACTWW ``` ## The solution Here is the nomenclature for...
## Short description of the problem When the user provides wrong bam files, the error message is not very clear. Issue spotted by @hdore. ## anvi'o version anvio dev version...