anvi-interactive - normalization of the layers data is not working

[FlorianTrigodet]

Using the master version.

I have noticed that the normalisation (to log or square root) of the layers misc data is not properly working. It changes the scale right, but does not change the bar size.

Normal:

Log transformed:

Log transformed, but I've changed the scale back to normal values:

[ozcan]

Hi Florian, I can not reproduce this problem, is there a step I might be missing? I can switch between log/none normalization with no problems, It looks like this for me: https://recordit.co/LoUIOLcuIe

Also It looks like in the screenshot titled "normal" you are actually using log norm. Can you give us more steps to reproduce this? Or maybe an example data?

Thank you

[FlorianTrigodet]

Hi @ozcan !

I see the confusion here, I hope this example will give you more information: Using anvio/tests/run_manual_interactive.sh I got the same thing as in your video: https://recordit.co/5iLriCzUg2

But after log transformation, the bar should not look like this:

They should look like that:

Does that make more sense?

[FlorianTrigodet]

Here is what's happening: The scale is changed correctly but the data (bar) are not log transformed.