Eelco

@opetryk https://github.com/nf-core/lncpipe/blob/dev_dsl1/main.nf This is the old version. We are trying to get started with transferring all that stuff into modules in the new pipeline

@SchreiberM It would be good to include both adapter trimming+quality filtering and the rRNA removal step.

[nf-schema](https://nextflow-io.github.io/nf-schema/latest/) provides a way to validate input parameters, such as the sample sheet and other required files, ensuring they are correctly defined before the pipeline runs. By specifying these parameters...

A creative task that can be started when the lncpipe backbone is ready. Inspiration and resources can be found in the [workflow diagrams guidelines](https://nf-co.re/docs/guidelines/graphic_design/workflow_diagrams). Enjoy!