Yoshiki Vázquez Baeza

Similar to what we are doing with [`format_emperor_autograph`](https://github.com/biocore/emperor/blob/master/emperor/format.py#L431) but in in the SVG file. I think emperor version and date created should suffice.

Add co variance matrix as an option in --ellipsoid_method

1

@rob-knight suggested in #39 to add an option to calculate the co variance matrix to determine the dimensions of the ellipsoids when jackknifing. > The co variance matrix should give...

Add lines/indicators in a custom axes

2

@antgonza suggested that being able to add an indicator to the plot ever N interval in the custom axes should be a good addition for the overall use of the...

Per #410 we had to compromise to be able to enlarge samples, the solution would be to maintain a copy of the scale grid values and reload that after the...

Add node count per metadata category.

2

Generally this would be useful to see in the color and shearing layers.

Refactor _keepUniqueKeys

2

This should add a nice speed boost.

Make edge thickness consistent across layouts and visualizations

2

When coloring the tree and changing the width of the lines the thickness will be dependent on the tree, and the layout. It would be nice if this wasn't the...

Fix summaries to add percent colored by category

1

The `Legend` class should compute percentages colored by each category and show as part of the summary.