Yoshiki Vázquez Baeza

It would be great if `ili could be a standalone JavaScript object that didn't rely on a server running for it to function correctly.

### Check for existing issues - [X] Completed ### Language Snakemake ### Tree Sitter parser link _No response_ ### Language server link _No response_ ### Misc notes It would be...

Here's a minimal example to reproduce: ### data ```bash cat > fwd.fastq @LH00285:102:22KNYJLT3:2:1101:7768:1032 1:N:0:AACCATAGAA+CCATCTCGCC TCCCAACGGCAGCGTCTCCCTGACGACGCGTCCGCCCCTGTCACGCAGGTAACGACGGACGGCCCCGTCGAAGCCTTTCTCGGCGGTGACGTTTCCCACAGCGTCGAGGGTGAACTCGTAGCTCACTGTNTCTTATACACATCTCCGAGC + 9I9I-IIII9-III-IIIII99IIII9IIIII9II9II9I9IIIIIIIIIIIIIIIIIIIIIIIIII-IIIIIIIIIIIII9IIII9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII#IIIIIIIIIIIIIIIIIIII @LH00285:102:22KNYJLT3:2:1101:10542:1032 1:N:0:ANCCATAGAA+CCATCTCGCC TNCTTCATACAAAACTGATATTCCTTATCCATGTTTCTTTACACATGTTCGGGAACTTTGGCTAAGTGTGGTATCTATATTCAATACGTCTGTAGATGTTGAATCTTTTCATTTTCATCCAGCTTTACANTCTATTCGATTTGATCTTTT + 9#IIIIIII-9III9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII#III-II9IIIIIIIIIIIII @LH00285:102:22KNYJLT3:2:1101:11762:1032 1:N:0:ANCCATAGAA+CCATCTCGCC TNTCTGTTCGGAATGGAAAGAGGTGGAACCCTTGTGCTATAACCACCTAAATTAAGGACTTAGCTGTACTAAATAATTTTTTCAATCAACCACTACAAAAGATCAACACAGTTTAGCACAAAGTCCCAANCTACCGTCTATTCAATTTTA + I#II-IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII#IIIIIIIIIIIIIIIIIIII @LH00285:102:22KNYJLT3:2:1101:13186:1032 1:N:0:ANCCATAGAA+CCATCTCGCC TNAGCGGTAAAGAGAGAGATATTTTTTAAGAAATCCCGTCTGTTACTCATAACATCATTCTATTTAAATAGGCTTATTTACAGAAATAAGGCAATGAATACGGGTTGCGATATTGATACCAGTACAAACNGTGGGAAGCCGCCTCCTTAT...

**Is your feature request related to a problem? Please describe.** It would be helpful if template notebooks could retain their original names (e.g., "quality-control.ipynb"). **Describe the solution you'd like** At...

Add support for stdin/stdout streaming

4

**Describe the solution you'd like** It would be helpful if sortmerna could receive sequences streamed through standard input and it could stream out sequences, perhaps only the "other" sequences or...

Fixes #216

I encountered an issue where samples with very few counts through `woltka classify`, which result in empty tables, trigger an error due to a call to numpy.vectorize. It would be...

Provide precompiled wheel builds

8

This will make installation of scikit-bio almost seamless! > Wheel is a pre-built package format that provides faster installation compared to Source Distributions (sdist), especially when a project contains compiled...

The current version of install_nbextension uses an outdated API that can no longer be imported.

See motivation for this change here: https://forum.qiime2.org/t/vega-editor-not-working-on-chrome-or-safari/33715