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Published 20 hours ago • verified publisher icon ESR-NZ
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A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

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[documentation] improve flow

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running_on_a_hpc.md Test data are set up for 'cohort' `bash ./test/setup_test.sh -a cohort` whereas pipeline is then set up for 'single' `DATA: "Single"`

rbrauning avatar rbrauning

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verified publisher icon ESR-NZ

Metadata

A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

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