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EBISPOT
GWAS Catalog Ontology and Curation Infrastructure
We had a GWAS-info query as follows: "We have a question about the associations API (https://www.ebi.ac.uk/gwas/rest/api/associations). We would like to get the associations associated to a gene. Precisely, we would...
This epic has been created to collect issues where old files have not been harmonised or harmonised incorrectly, to ensure they are all up to date when the new harmonisation...
As a curator, I need a way to confirm that sumstats have been released as expected. When a submission has passed validation successfully, I need to see whether the submission...
From our submission guidelines, 'coordinate system' in the submission template should be mandatory: https://www.ebi.ac.uk/gwas/docs/submission-summary-statistics-plus-metadata I tested this in the dev instance of submission app and it passed validation with an...
Some recent submissions produced a celery error for MAF lower limit (value is not a float). The value was entered as a % in the template, whereas only a decimal...
Currently, when you export the table, the entire table will be returned without taking into account the search parameters set, it was requested to take these search params into account...
At the moment Depo Sync only creates unpublished studies when a body of work submission is created via Deposition app, but if the submission is edited via Depo CUration then...
The following studies are annotated with a 'quality' EFO (EFO_0005951). A new measurement EFO (EFO_0021796) has been created which should replace this quality term. The quality term can be removed...
All GxE interaction studies should have the GxE flag set to true (curators assign this by ticking a box in the curation app, or entering information in the submission metadata...
Sumstats FTP sync is failing is because of accession Id being null returned from Public studies API , we had changed API to return all studies instead of isPublished flag...