MuMoT

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Based on a suggestion by Jamie Wood at York - plot Fourier transform of noise solutions to show deviations from white noise - cf `showNoiseSolutions()` and `noiseCorrrelations()` - @tbose1 to...

jarmarshall

Currently multicontrollers must reference a single model, but allowing multiple models to be controlled simultaneously could be helpful, e.g. for observing changes in behaviour. Achieving this will require refactoring of...

jarmarshall

The dropdown widget of MuMoTstochasticSimulationController for the Final distribution visualisation does not render latex correctly

1

Probably due to an `ipywidgets` issue...

joefresna

Check for duplication of logic - e.g. `_chooseXrange` and `_chooseYrange` recur multiple times in different view classes, so should move up the class hierarchy.

jarmarshall

Figure download is not working on Chrome

2

joefresna

Current graphiviz-based implementation does not give production-quality figures

jarmarshall

Add color selection by user for state

1

The user can select (through widget) the color to assign to each state (also called reactant). The color will be used in the plots (e.g., network graph, temporal dynamics)

joefresna

Add dynamic plotting while computation is running (especially useful for multiagent simulations)

3

Add "Play", "Pause", "One-Step" buttons to start, pause and advance 1-step at a time the simulation

joefresna

Add bounded arena

3

At the moment the multiagent particle simulation have periodic boundary conditions (torus). Add walls and either: * let the particle bounce on the walls (as molecules do) * let the...

joefresna

Similarly to MA and SSA controllers (issue #10) in `"Final distribution"` visualisation type, the plot axes could be set through drop-down widgets (if not specified) (related to issue #74)

joefresna