MuMoT

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Check bookmarking of all advanced multicontrollers in `MiscTests/MuMoT_testMulticontroller.ipynb` not all use cases provide a complete (i.e. widget free) bookmark

jarmarshall

remove MuMoTcontroller._plotLimitsWidget and use the self._widgetsExtraParams['plotLimits']

4

`_plotLimitsWidget` should be handled as other parameters. It would be sufficient to put 'plotLimits' in the `_widgetsExtraParams` dictionary (or, most probably, in the `_widgetsPlotOnly` dict as recomputation might not be...

joefresna

joefresna

plotProportions should not retrigger computation, but just adapt the axes

joefresna

A toggle item in the Advanced Options menu should be added

joefresna

Bifurcation() fails to find all branches

2

The Epidemic Models Demo notebook uses `bifurcation()` for a transcritical bifurcation which takes place when the bifurcation parameter crosses 1. The `bifurcation()` function is sensitive to the `initBifParamz value. If...

renapagli

Currently basic van Kampen expansion and Stochastic Simulation Algorithm are implemented (`showVanKampenExpansion()` and `SSA()` respectively). Implementation of more sophisticated techniques would enable more complicated systems to be analysed, e.g. time-inhomogeneous...

jarmarshall

Allow for creating models from Python strings

6

Following on from #67 I I think it would be a very good thing if MuMoT models could be created and referenced in Notebooks without using Notebook cell execution numbers....

willfurnass

Parameters reported in logs lag behind latest versions plotted, according to widget values.

jarmarshall

Sometimes takes a couple of minutes after first opening a Notebook and executing a few cells. Example: create a conda env using `environment.yml` then start running the User Manual Notebook....

willfurnass