MuMoT

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Add CFF file to make it easier for others to cite MuMoT

1

See https://twitter.com/natfriedman/status/1420122675813441540

willfurnass

Intermittently hitting cell execution timeout of 120 seconds

2

In [this GitHub Actions job](https://github.com/DiODeProject/MuMoT/runs/730054858?check_suite_focus=true): ``` TestNotebooks/MiscTests/MuMoTtest_NoiseFixedPoints::ipynb::Cell 52 FAILED [ 79%] =================================== FAILURES =================================== ______ TestNotebooks/MiscTests/MuMoTtest_NoiseFixedPoints.ipynb::Cell 52 _______ Notebook cell execution failed Cell 52: Timeout of 120 seconds exceeded executing...

willfurnass

…t ratio of the axes. This solves #409

joefresna

This issue appeared recently in one of the last MuMoT releases, possibly when the plotting methods have been modified.

joefresna

tox.ini: find Notebooks to run with nbval-lax using unix find cmd (WIP)

1

Closes #325

willfurnass

Test suite: run all notebooks in one or more dirs rather than explicitly named notebooks

9

Currently explictly list the notebooks to be run in tox.ini. A cleaner approach would be to have - one or more directories within which all notebooks should be run -...

willfurnass

model2.showODEs(method='vanKampen') -> IndexError: list index out of range

7

Encountered when using Python 3.6 or 3.7 and latest acceptable versions of dependencies: see CI runs for https://github.com/DiODeProject/MuMoT/pull/376

willfurnass

Use of bare 'except:' is bad

1

Bare `except:` statements will swallow up all exceptions, making debugging more difficult and possibly making certain code paths inaccessible. For example in `views.py` line 2887 can never be reached as...

willfurnass

It is not possible to change the axes labels through the option `ylab`. For example, try this code: ``` mumot.MuMoTmultiController([model.SSA(silent=True), model.integrate(silent=True)], shareAxes=True, choose_yrange=[0,1], ylab="This is the y label" ) ```...

joefresna

Do not suppress tracebacks when running 'test' notebooks via nbval

3

At present tracebacks are suppressed via the logic in __init__.py. This is annoying when pytest fails. A possible solution: if there is an active IPython session then only suppress tracebacks...

willfurnass