Dan Berrios

@bpeters42 This submission says it is for an application ontology... Isn't OBI a domain ontology? If so, wouldn't overlap be a non-issue?

@bpeters42 How exciting! I agree with both of you that we should have the proper subtrees of devices located in the proper area ontologies, and they should have common roots...

@Dalalghamdi Can you give examples of DNA processed specimen, to give us an idea of the nature and use of it. Is it a result of something that happens before,...

Discussed on OBI Dev Call 06/13/22: - “Regulatory region” should be imported from SO - “Region” conflates nucleotide and AA sequencing - Some of the assays on the spreadsheet should...

Discussed on OBI Dev Call 09/14/20. Assays are understood and asserted to have been completed planned processes.

Proposed Definition: A cell specimen comprised of a population of fibroblast cells. Superclass: Cell specimen Perhaps subclasses would/could indicate anatomical source.

I would say it's possible you can be performing a sequencing submitter role, but not a sequence annotator role, so we would need 2 separate roles defined in OBI. OBI...

The Drop-seq paper refers to the assay with a hyphen (not Dropseq). Should we also?

OBI proposes: Label: Biomedical laboratory Textual definition: An organization that performs biomedical assays, processes biospecimens, analyses biomedical data and conducts similar planned processes. Definition source: OBIB Parent: organization Discussed possibility...

Discussed on OBI call 4/11/22. OBI proposes: Clinical variant interpretation Label: Clinical variant interpretation Alternative term(s): clinical variant impact Definition: A conclusion based on data representing a variant’s significance in...